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55 Open 1,061 Closed
55 Open 1,061 Closed
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Issues list

Slow VEP Server Performance
#1807 opened Nov 28, 2024 by Danisov
@dglemos
1
Problem with VEP query stuck without results (without offline mode)
#1806 opened Nov 28, 2024 by Taalouane
@dglemos
6
shift_3prime bug
#1804 opened Nov 28, 2024 by fzhbioinfo
@olaaustine
2
Failing tests t/Runner.t
#1802 opened Nov 25, 2024 by PetrKralCZ
@dglemos
1
missing novel transcript in the VEP output
#1801 opened Nov 24, 2024 by tuncayseker
@dglemos
2
Annotation fails randomly with structural variants coming from Manta
#1800 opened Nov 20, 2024 by fperezcobos
@olaaustine
6
Incorrect Annotation for Frameshift Variant in VEP 113 bug
#1796 opened Nov 19, 2024 by GSYongWu
@olaaustine
7
Annotation Discrepancy for Variant 1:98348885_G>A in VEP 113
#1793 opened Nov 18, 2024 by GSYongWu
@dglemos
5
Homo_sapiens.GRCh38.dna.toplevel.fa.gz.fai file not updated in release 113
#1792 opened Nov 15, 2024 by rklocke
@jamie-m-a
vep can't find index file
#1791 opened Nov 14, 2024 by jerrypgreenberg
@jamie-m-a
3
Missing annotation of intergenic region, --distance doesn't help
#1790 opened Nov 13, 2024 by dshafranskaya
@jamie-m-a
VEP 113 Interrupts on Large VCF Files with Numerous Transcript-assembly Mismatch Warnings
#1787 opened Nov 11, 2024 by GSYongWu
@dglemos
4
No protein version from overlap/id/:id end point results
#1786 opened Nov 8, 2024 by XLIU-hub
@nakib103
1
VEP needs sorted VCFs again
#1784 opened Nov 5, 2024 by gernophil
@nakib103
1
Unable to Locate PolyPhen and SIFT SQLite Files for CHM13 Genome
#1783 opened Nov 5, 2024 by LuyaoRen
@nakib103
1
ONE-BASED REFERENCE
#1779 opened Oct 25, 2024 by vappiah
@likhitha-surapaneni
1
MSG: The coordinate interval for display is of different length than for the reference allele
#1775 opened Oct 22, 2024 by suzyhh
@likhitha-surapaneni
7
Missing annotations for BND variants.
#1774 opened Oct 22, 2024 by ramprasadn
@likhitha-surapaneni
2
checksum for <genome> doesn't match checksum in CHECKSUMS file on FTP site
#1771 opened Oct 18, 2024 by amizeranschi
@likhitha-surapaneni
2
Optimize WGS VCF File Annotation for Improved Performance and Speed
#1769 opened Oct 18, 2024 by Ananya-swi
@jamie-m-a
7
How can I use my own fasta and gff to annotate?
#1768 opened Oct 15, 2024 by DayTimeMouse
@jamie-m-a
1
MSG: ERROR: No such operator "D"
#1767 opened Oct 11, 2024 by BenjaminDEMAILLE
@jamie-m-a
1
substr outside of string in VariationEffect.pm line 1329
#1764 opened Oct 9, 2024 by bartgrantham
@dglemos
6
Inconsistent HGNC:ID results between single-thread and multi-thread in vep
#1759 opened Sep 26, 2024 by karlestira
@likhitha-surapaneni
6
Can not find .index file for FASTA file bug
#1755 opened Sep 18, 2024 by kuaileshizuihao
@likhitha-surapaneni
4
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