ChIP-seq peak-calling, QC and differential analysis pipeline.

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

The ChIP-Seq peak calling algorithm using convolution neural networks

Multiple-replica multiple-condition Macs2 ChIPSeq wrapper

🥇 Maximum homogeneity clustering for one-dimensional data

Benchmarking ChIP-seq peak callers

CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.

An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

ChIP-Seq processing pipeline on snakemake

cell-free ChIP-seq pipeline

Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.

Peak classification with Deep Learning

Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.

SPP - R package for analysis of ChIP-seq and other functional sequencing data

Peak Calling algorithm for Chromatin-immunoprecipitation sequencing (ChIP-seq) data

Peak calling optimization via real time results assessment and interactive parameter adjustment.

R package for mining, calling, and importing epigenomic peaks.

Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing

A small script to find peaks from the .bigWig file and output them in a .bed file.