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gene-expression-omnibus

Here are 11 public repositories matching this topic...

Bohdan-Khomtchouk / Biochat

Natural language processing of Gene Expression Omnibus data

nlp metadata natural-language-processing bioinformatics lisp common-lisp computational-biology integrative-analysis metadata-extraction gene-expression-omnibus

Updated May 1, 2019
Common Lisp

uc-bd2k / GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

processing rna-seq r geo graphical-interface gene-expression bioinformatics-pipeline interactive-analysis shiny-apps rna-seq-analysis rna-seq-data interactive-visualizations bioinformatics-analysis gene-expression-omnibus rna-seq-pipeline geo-data-processing grein

Updated May 28, 2019
HTML

uc-bd2k / GREP2

GEO RNA-seq Experiments Processing Pipeline

rna-seq pipeline sra gene-expression-omnibus sratoolkit rna-seq-pipeline

Updated Oct 25, 2019
R

rvidal / fetchgeo

simple python script to download gene expression raw data files from NCBI's GEO (Gene expression omnibus)

python geo gene-expression-omnibus

Updated Nov 12, 2012
Python

iretes / GEO-classification

🧬 Implementation of a pipeline to compare the performance of Machine Learning classifiers on Gene Expression Omnibus data.

classification-algorithm performance-comparison gene-expression-omnibus

Updated Nov 10, 2023
Python

alicenguyen / geo-utils

tools for processing gene expression omnibus data

python parser gene-expression-omnibus

Updated May 17, 2020
Python

annakatsiki / dexplore

DExplore: an online tool for detecting differentially expressed genes from mRNA microarray experiments (www.dexplore.gr, https://hub.docker.com/r/akatsiki/dexplore)

differential-expression gene-expression-omnibus bioinformatics-tool

Updated Oct 7, 2024
R

antonkulaga / geo-fetch

Library and console tool to fetch data from Gene Expression Omnibus

bioinformatics geo gene-expression-omnibus

Updated Sep 28, 2021
Scala

KumaTea / GEOdb

An asynchronous Python library for the Gene Expression Omnibus (GEO) database

bioinformatics gene-expression-omnibus

Updated May 19, 2024
Python

neurogenomics / PeakyFinders

R package for mining, calling, and importing epigenomic peaks.

r genomics encode r-package epigenomics gene-expression-omnibus peak-calling

Updated Oct 2, 2024
R

dlmipt / MetaDataPredictionFromGE

🐁 Prediction of Experimental Metadata from Gene Expression

machine-learning bioinformatics biology gene-expression ncbi gene-expression-omnibus

Updated Aug 10, 2017

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