SCRIPTS 0.4 - Connectome Harmonics

This include the connectome harmonics framework introduced by Atasoy et al. (2016) onto the SCRIPTS multi-modal processing pipeline introduced by Proix et al. (2016).

A coarse sensitivity analysis of the framework using template cortical surface meshes from FreeSurfer and the Gibbs tractography streamlines from 169 subjects is now published by Naze et al. (2020) using this code.
Template connectome harmonics for 3 cortical surface meshes are made available on zenodo [link].

See README for further information and how to run the extension.
Tested by S. Naze and T. Proix on HCP subject 100307.

SCRIPTS 0.4.1

• Remove need for Matlab
• New subparcellation scheme where arbitrary number of subregions can be chosen

SCRIPTS 0.4

• Dockerfile for easy installation with Docker.
• Tests.
• Reorganization and simplification of the code => compatibility with tvb-make.
• 4 new parcellations: Destrieux, HCP-MMP1, Yeo7 and Yeo 17.

SCRIPTS 0.3 RC1

Now using python 3 and MRtrix 3.0RC2 with many pipeline improvements in the tractography part.

SCRIPTS 0.3

Some bug fixes and improvements from RC1

v0.2

Create release v0.2 for the bash pipeline.
New in v0.2:

• replace mrtrix2 by mrtrix3