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22 Open 32 Closed
22 Open 32 Closed
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Issues list

Return contribution of genes expression to component of PCA
#66 opened Jun 14, 2024 by konrad
Feature Request: Create z-scores and heatmap plots from z-scores
#65 opened Jun 13, 2024 by Tillsa
[Error] Example for multi-species does not work
#64 opened Apr 7, 2024 by elhossary
[Feature request] Use NCBI datasets to download input files
#62 opened Apr 7, 2024 by elhossary
Assign libraries for paired end data in the reademption deseq command
#61 opened Apr 5, 2024 by termithorbor
1
Advantage/disadvantage of build_fragments
#60 opened Mar 14, 2024 by termithorbor
Which normalization from gene_quanti is used for Deseq2?
#58 opened Mar 5, 2024 by termithorbor
1
Feature request: Create Coverage based on CIGAR string instead of start and end position
#57 opened Dec 20, 2023 by Tillsa
Unusually high memory memory usage with gene_quanti
#56 opened Sep 21, 2023 by kmuench
15
[Clarification] Why are alignments fractional?
#54 opened Sep 11, 2023 by kmuench
5
Errors and warnings while fragment building
#53 opened Jul 14, 2023 by elhossary
[Suggestion] Make fragment building as a separate subcommand
#50 opened Jul 1, 2023 by elhossary
Automatic determination of file type (fasta or fastq) enhancement
#48 opened Feb 24, 2023 by Tillsa
@Tillsa
1
hello .i have error while align using reademption. im sure about the requirements that i have fullfilled .please check the screenshoots and point me the mistake and solution.
#47 opened Feb 21, 2023 by AzkaSaleem
3
DESeq not working without replicates
#46 opened Dec 6, 2022 by mgsrod
docker container without root
#45 opened Nov 8, 2022 by qiyubio
2
[Feature request] option to filter alignments based on annotation type
#37 opened Oct 14, 2021 by elhossary
Usage problem in align subcommand
#36 opened Aug 8, 2021 by elhossary
[Feature request] Add support for exporting coverage as BigWig
#35 opened Aug 6, 2021 by elhossary
Logical issue in coverage min normalization
#27 opened Jun 4, 2020 by elhossary
Add subcommand to check gff files
#20 opened Aug 12, 2019 by konrad
Generate counting of unmapped reads directly from the bam file
#19 opened Jul 26, 2019 by konrad
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