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Generate counting of unmapped reads directly from the bam file #19

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konrad opened this issue Jul 26, 2019 · 0 comments
Open

Generate counting of unmapped reads directly from the bam file #19

konrad opened this issue Jul 26, 2019 · 0 comments

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@konrad
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konrad commented Jul 26, 2019

Since 0.3 segemehl reports unmapped reads (use samtools view -f4 my_mapping.bam to see those). Discard the generation of the fasta file of unmapped read and get it directly from the bam file.
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