Release 2.9.1

Release 2.9.1

Release for tvb-library and tvb-contrib on Pipy

Bug

EBR-63 Problem in remake_figure_WilsonCowan.ipynb

Task

EBR-53 Move rateML module from under tvb-library into tvb-contrib

EBR-54 Update copyright year and Authors on tvb-root repo

EBR-81 scipy compatibility with 1.14

EBR-82 compatibility with siibra 1.0a14

Release 2.9.0

Maintenance release

• compatibility with py3.11 and py3.12
• adjust to siibra 1.0
• migrate from OKD to Kubernetes
• fix Phase Plane dependency towards old contour implementation in matplotlib
• improve first time setting validation

Release 2.8.2

Release for tvb-framework on Pipy

• Cleanup after tvb-data changed (by removing personal data in release 2.8 on Zenodo).
• fix bug in tvb-library https://req.thevirtualbrain.org/browse/TVB-3089

Release 2.8.1

Changes in Models

• The AdEx (ZerlautSecondOrder) model was consolidated with other external implementations, has changed number of variables (adding an external input) and has now examples replicating some of the figures from papers
• K ION Exchange model was added

Bug

• [TVB-2380] - SQLite refuses DB path with Greek letters
• [TVB-3062] - EpileptorT default attribute not among choices
• [TVB-3063] - KuramotoT model not working inside the Simulator
• [TVB-3072] - Investigate and fix test_node_complex_coherence_adapter
• [TVB-3074] - tvb-web refuses to launch when tvb-data is installed from Pypi
• [TVB-3077] - Fix dfun eq for some models in MatJax - PhasePlane web page
• [TVB-3081] - Deepcopy of a simulator obj handles incorrectly the sim.monitors list

Task

• [TVB-2118] - Make getting more logging info easier for ipython user
• [TVB-3069] - Adapt tvb-framework to the latest siibra release 0.4*
• [TVB-3073] - Release 2.8.1 on OKD
• [TVB-3078] - Deal with "tvb" namespace on Pypi
• [TVB-3080] - Run siibra notebooks as part of a github action

Improvement

• [TVB-3075] - When parsing .tvb.configuration value, strip spaces

Release 2.8

Release for tvb-library.
It included enhanced HTML representation for HasTraits objects from tvb. This means in particular usages in JupyterLab.
It also included few bug-fixes (TVB-3067 and TVB-3071 )

Release 2.7.3

• Fix package tvb-framework (2.7.3 and 2.7.3.3) not to include bids_monitor package
• Change signature Connectivity.from_bytes_stream(cls, bytes_stream, content_type='.zip') by adding the second param
  • same for Surface, Sensors and TimeSeries

Release 2.7.2

Update copyright text
Convert Tumor import button into a proper Importer with user-given data.
Change default param values in SigmoidalJansenRit

Release 2.7.1

Enable siibra after 3rd party fix.
Project sharing changes.
Visual effect on button pressed

Release 2.7

• Bug fixes (e.g. Wavelet adapter, allenSDK compatibility, mutable neotraits, neocom.DirLoader)
• BCT analyzers - switch to bctpy library
• Siibra integration - temporarily disabled from TVB-Distribution web GUI due to a KG query - siibra issue
• BIDS monitoring module
• add deepcopy implementation on HasTraits
• Projects can be marked as read-only (useful for shared projects like DefaultProject on OKD EBRAINS)

Release 2.6

Release on Pypi.

* [TVB-2827] - Support h5py>3
* [TVB-3014] - Generate a BIDS demo dataset
* [TVB-3015] - EEG monitor drops data on H5 export
* [TVB-2900] - TVB-BIDS derivatives compatibility
* [TVB-3009] - Rename scientific_library into tvb_library and framework
* [TVB-3011] - Review and merge PR from GSOC on plotting tools
* [TVB-3006] - Integrate Sonar with tvb code