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@single-cell-genetics

single-cell-genetics

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  1. cellsnp-lite cellsnp-lite Public

    Efficient genotyping bi-allelic SNPs on single cells

    C 132 11

  2. cellSNP cellSNP Public

    Pileup biallelic SNPs from single-cell and bulk RNA-seq data

    Python 76 11

  3. vireo vireo Public

    Demultiplexing pooled scRNA-seq data with or without genotype reference

    Python 74 27

  4. cardelino cardelino Public

    Clone identification from single-cell data

    R 59 12

  5. XClone XClone Public

    Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

    Python 31 3

  6. singlecell_neuroseq_paper singlecell_neuroseq_paper Public template

    Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

    Jupyter Notebook 21 6

Repositories

Showing 10 of 10 repositories
  • XClone Public

    Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

    single-cell-genetics/XClone’s past year of commit activity
    Python 31 Apache-2.0 3 7 (2 issues need help) 0 Updated Oct 11, 2024
  • MQuad Public

    Tool for modelling of mitochondrial heteroplasmy

    single-cell-genetics/MQuad’s past year of commit activity
    Python 16 Apache-2.0 9 1 0 Updated Jul 16, 2024
  • singlecell_neuroseq_paper Public template

    Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

    single-cell-genetics/singlecell_neuroseq_paper’s past year of commit activity
    Jupyter Notebook 21 Apache-2.0 6 1 0 Updated Jun 28, 2024
  • optimising_singlecell_eqtl_paper Public

    Repository containing the code to reproduce the analyses contained in our manuscript: Optimising expression quantitative trait locus mapping workflows for single-cell studies

    single-cell-genetics/optimising_singlecell_eqtl_paper’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 1 0 0 Updated Jun 28, 2024
  • singlecell_endodiff_paper Public

    Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

    single-cell-genetics/singlecell_endodiff_paper’s past year of commit activity
    Jupyter Notebook 15 Apache-2.0 6 2 0 Updated Jun 28, 2024
  • limix_qtl Public
    single-cell-genetics/limix_qtl’s past year of commit activity
    Python 18 Apache-2.0 14 4 1 Updated Jun 26, 2024
  • cellsnp-lite Public

    Efficient genotyping bi-allelic SNPs on single cells

    single-cell-genetics/cellsnp-lite’s past year of commit activity
    C 132 Apache-2.0 11 40 (1 issue needs help) 0 Updated Jun 18, 2024
  • vireo Public

    Demultiplexing pooled scRNA-seq data with or without genotype reference

    single-cell-genetics/vireo’s past year of commit activity
    Python 74 Apache-2.0 27 47 1 Updated May 23, 2024
  • cardelino Public

    Clone identification from single-cell data

    single-cell-genetics/cardelino’s past year of commit activity
    R 59 12 1 0 Updated Nov 10, 2022
  • cellSNP Public

    Pileup biallelic SNPs from single-cell and bulk RNA-seq data

    single-cell-genetics/cellSNP’s past year of commit activity
    Python 76 Apache-2.0 11 10 0 Updated Jun 9, 2022

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