Update _phosphoegf.py #212
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| name: Unit tests (fast suite) | |
| on: | |
| push: | |
| branches: [main, dev] | |
| pull_request: | |
| branches: [main, dev] | |
| types: [ opened, synchronize, reopened, ready_for_review ] | |
| jobs: | |
| tests: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -e {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python: ['3.9', '3.10', '3.11', '3.12'] | |
| os: [ubuntu-latest, macos-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python }} | |
| steps: | |
| - name: Check out | |
| uses: actions/checkout@main | |
| - name: Install graphviz headers | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y graphviz graphviz-dev | |
| - name: Install graphviz headers | |
| if: ${{ matrix.os == 'macos-latest' }} | |
| run: | | |
| brew install graphviz | |
| echo "PATH=\"$(brew --prefix graphviz)/bin:$PATH\"" >> "$GITHUB_ENV" | |
| echo "CFLAGS=\"-I$(brew --prefix graphviz)/include\"" >> "$GITHUB_ENV" | |
| echo "LDFLAGS=\"-L$(brew --prefix graphviz)/lib\"" >> "$GITHUB_ENV" | |
| - name: Setup Python ${{ matrix.python }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| installer-parallel: true | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ matrix.python }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: | | |
| poetry install --no-interaction --no-root | |
| - name: Install library | |
| run: poetry install --no-interaction -E corneto-backends | |
| - name: Tests and coverage | |
| if: ${{ github.event_name == 'push' }} | |
| run: | | |
| poetry run pytest -v --cov --color=yes --durations=0 | |
| - name: Tests | |
| if: ${{ github.event_name == 'pull_request' }} | |
| run: | | |
| poetry run pytest -v --cov --color=yes --durations=0 | |
| - name: Upload coverage reports to Codecov | |
| if: ${{ github.event_name == 'push' }} | |
| env: | |
| CODECOV_NAME: ${{ matrix.python }}-${{ matrix.os }} | |
| run: | | |
| poetry run codecovcli --verbose upload-process -t ${{ secrets.CODECOV_TOKEN }} -n 'fast'-${{ github.run_id }} -F fast |