docs rebuild

NAMESPACE

@@ -2,7 +2,7 @@
 
 export(ClusterORA)
 export(DMA)
-export(InspectID)
+export(DetectedID)
 export(LoadHallmarks)
 export(LoadKEGG)
 export(LoadMetalinks)
@@ -16,6 +16,7 @@ export(MetaProViz_log)
 export(MetaProViz_logfile)
 export(MetaProViz_set_loglevel)
 export(PoolEstimation)
+export(PossibleID)
 export(PreProcessing)
 export(ReplicateSum)
 export(StandardORA)
@@ -30,26 +31,87 @@ export(metaproviz_load_config)
 export(metaproviz_reset_config)
 export(metaproviz_save_config)
 importFrom(OmnipathR,config_path)
+importFrom(OmnipathR,id_types)
 importFrom(OmnipathR,load_config)
 importFrom(OmnipathR,logfile)
 importFrom(OmnipathR,read_log)
 importFrom(OmnipathR,reset_config)
 importFrom(OmnipathR,save_config)
 importFrom(OmnipathR,set_loglevel)
+importFrom(OmnipathR,translate_ids)
+importFrom(dplyr,across)
+importFrom(dplyr,arrange)
+importFrom(dplyr,case_when)
 importFrom(dplyr,filter)
+importFrom(dplyr,first)
 importFrom(dplyr,group_by)
 importFrom(dplyr,mutate)
+importFrom(dplyr,mutate_all)
 importFrom(dplyr,n)
+importFrom(dplyr,pull)
+importFrom(dplyr,relocate)
 importFrom(dplyr,rename)
+importFrom(dplyr,rowwise)
 importFrom(dplyr,select)
+importFrom(dplyr,select_if)
+importFrom(dplyr,summarise)
+importFrom(dplyr,summarise_all)
 importFrom(dplyr,summarise_at)
+importFrom(dplyr,summarize)
+importFrom(dplyr,ungroup)
+importFrom(factoextra,fviz_screeplot)
 importFrom(ggbeeswarm,geom_beeswarm)
+importFrom(ggplot2,aes)
+importFrom(ggplot2,aes_string)
+importFrom(ggplot2,annotate)
+importFrom(ggplot2,annotation_custom)
+importFrom(ggplot2,autoplot)
 importFrom(ggplot2,element_rect)
+importFrom(ggplot2,geom_abline)
+importFrom(ggplot2,geom_bar)
+importFrom(ggplot2,geom_boxplot)
+importFrom(ggplot2,geom_density)
+importFrom(ggplot2,geom_dotplot)
+importFrom(ggplot2,geom_histogram)
+importFrom(ggplot2,geom_hline)
+importFrom(ggplot2,geom_line)
+importFrom(ggplot2,geom_point)
+importFrom(ggplot2,geom_qq)
+importFrom(ggplot2,geom_qq_line)
+importFrom(ggplot2,geom_smooth)
+importFrom(ggplot2,geom_violin)
+importFrom(ggplot2,geom_vline)
 importFrom(ggplot2,ggplot)
 importFrom(ggplot2,ggplotGrob)
+importFrom(ggplot2,ggplot_build)
+importFrom(ggplot2,ggtitle)
+importFrom(ggplot2,labs)
+importFrom(ggplot2,scale_color_manual)
+importFrom(ggplot2,scale_linetype_discrete)
+importFrom(ggplot2,scale_x_continuous)
+importFrom(ggplot2,scale_y_continuous)
+importFrom(ggplot2,stat_summary)
 importFrom(ggplot2,theme)
+importFrom(ggplot2,theme_bw)
+importFrom(ggplot2,theme_classic)
+importFrom(ggplot2,theme_minimal)
+importFrom(ggplot2,xlab)
+importFrom(ggplot2,ylab)
 importFrom(ggpubr,get_legend)
+importFrom(ggpubr,stat_pvalue_manual)
+importFrom(ggrepel,geom_text_repel)
+importFrom(grid,convertUnit)
 importFrom(grid,unit)
+importFrom(gridExtra,grid.arrange)
+importFrom(gtools,foldchange2logratio)
+importFrom(hash,keys)
+importFrom(hash,values)
+importFrom(inflection,uik)
+importFrom(limma,contrasts.fit)
+importFrom(limma,eBayes)
+importFrom(limma,lmFit)
+importFrom(limma,makeContrasts)
+importFrom(limma,topTable)
 importFrom(logger,log_info)
 importFrom(logger,log_trace)
 importFrom(logger,log_warn)
@@ -59,22 +121,42 @@ importFrom(magrittr,add)
 importFrom(magrittr,extract)
 importFrom(magrittr,extract2)
 importFrom(magrittr,multiply_by)
+importFrom(patchwork,wrap_plots)
 importFrom(purrr,map)
 importFrom(purrr,map_chr)
 importFrom(purrr,map_int)
 importFrom(purrr,partial)
 importFrom(purrr,reduce)
+importFrom(qcc,mqcc)
 importFrom(readr,cols)
 importFrom(readr,read_csv)
+importFrom(reshape2,melt)
 importFrom(rlang,"!!!")
 importFrom(rlang,"!!")
 importFrom(rlang,"%||%")
 importFrom(rlang,":=")
+importFrom(rlang,sym)
+importFrom(rlang,syms)
+importFrom(rstatix,dunn_test)
+importFrom(rstatix,games_howell_test)
+importFrom(stats,TukeyHSD)
+importFrom(stats,aov)
+importFrom(stats,bartlett.test)
+importFrom(stats,kruskal.test)
+importFrom(stats,lm)
+importFrom(stats,p.adjust)
+importFrom(stats,shapiro.test)
 importFrom(stringr,str_match)
 importFrom(stringr,str_sub)
+importFrom(stringr,str_to_lower)
 importFrom(stringr,str_trim)
 importFrom(tibble,column_to_rownames)
 importFrom(tibble,rownames_to_column)
+importFrom(tidyr,pivot_longer)
+importFrom(tidyr,separate)
+importFrom(tidyr,unite)
+importFrom(tidyselect,everything)
+importFrom(tidyselect,starts_with)
 importFrom(utils,head)
 importFrom(utils,packageVersion)
 importFrom(utils,read.csv)