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scheduled-bots

These bots are running on Jenkins, which is hosted on AWS.

Bot Creation Guidelines

Data Sources

Data used by a bot, that is regularly updated by an external source, should be handled by our instance of the Biothings.api. The bot should access the data from the mongodb server which is running on the same instance as Jenkins.

Bots

See Bot Status

Wikidata - Disease Ontology Feedback Loop

Code for detecting changes and creating robot templates is located here: https://github.com/SuLab/scheduled-bots/blob/master/scheduled_bots/disease_ontology/robot/run.py

Installation

Install files from requirements.txt and WikiDataIntegrator via pip. Install scheduled-bots by changing into the directory with the setup.py file and install it with pip install -e .

To import from scheduled-bots, you may also need to add that same directory to your system path with sys.path.insert(0, '<path>').

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GeneWiki Scheduled Bots

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  • Python 54.6%
  • Jupyter Notebook 44.8%
  • Other 0.6%