Greater Paris University Hospitals (AP-HP)

All

30 repositories

Cohort360-Back-end
Public
Backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Administration Portal @ https://github.com/aphp/Cohort360-AdministrationPortal
api administration portal cohort
Python
•
Apache License 2.0
•0•4•0•0•Updated Nov 28, 2024Nov 28, 2024
Cohort360-FrontEnd
Public
A web application to find patients, build cohorts and visualize health records
query data-visualization medical fhir visualize-data medtech clinical-data cohorts omop cohort-analysis
TypeScript
•
Apache License 2.0
•10•44•3•12•Updated Nov 27, 2024Nov 27, 2024
confit
Public
Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Python type annotations, minimal configuration files and a robust CLI.
python cli registry validation interpolation configuration
Python
•
BSD 3-Clause "New" or "Revised" License
•0•10•1•1•Updated Nov 26, 2024Nov 26, 2024
redcap-containers
Public
Apache License 2.0
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
Cohort360-QueryExecutor
Public
Scala
•
Mozilla Public License 2.0
•0•1•0•0•Updated Nov 25, 2024Nov 25, 2024
IG-FHIR-EDS-SOCLE-COMMUN
Public
Guide d'implémentation FHIR du socle EDS
GLSL
•
MIT License
•2•0•0•0•Updated Nov 23, 2024Nov 23, 2024
foldedtensor
Public
PyTorch extension for handling deeply nested sequences of variable length
Python
•
BSD 3-Clause "New" or "Revised" License
•0•10•3•0•Updated Nov 22, 2024Nov 22, 2024
edsnlp
Public
Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
nlp fast text-mining deep-learning pytorch spacy medical french multi-task rule-based
Python
•
BSD 3-Clause "New" or "Revised" License
•30•116•21•9•Updated Nov 22, 2024Nov 22, 2024
edspdf
Public
EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-learning-based approaches to classify text blocs between body and meta-data.
pdf machine-learning extraction
Python
•
BSD 3-Clause "New" or "Revised" License
•6•42•0•0•Updated Nov 21, 2024Nov 21, 2024
eds-pseudo
Public
EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports
nlp pseudonymisation edsnlp
Python
•
Other
•5•48•1•0•Updated Nov 14, 2024Nov 14, 2024
ig-template-aphp
Public
CSS
•0•0•0•0•Updated Sep 20, 2024Sep 20, 2024
heemod
Public
Markov Models for Health Economic Evaluations
R
•
GNU General Public License v3.0
•2•13•2•0•Updated Sep 11, 2024Sep 11, 2024
federation-api
Public
Python
•0•0•0•0•Updated Sep 10, 2024Sep 10, 2024
Cohort360
Public
Python
•0•0•0•0•Updated Sep 10, 2024Sep 10, 2024
ipptoinclusion
Public
R
•
GNU General Public License v3.0
•0•1•0•0•Updated Aug 2, 2024Aug 2, 2024
eds-scikit
Public
eds-scikit is a Python library providing tools to process and analyse OMOP data
data-science medical omop clinical-data-warehouse python
Python
•
BSD 3-Clause "New" or "Revised" License
•5•37•8•5•Updated Jun 27, 2024Jun 27, 2024
rgho
Public
🌐Access WHO Global Health Observatory Data From R
R
•
GNU General Public License v3.0
•0•5•0•0•Updated Feb 9, 2024Feb 9, 2024
edsteva
Public
EDS-TeVa provides a set of tools that aims at modeling the adoption over time and across space of the Electronic Health Records.
Python
•
BSD 3-Clause "New" or "Revised" License
•0•13•5•1•Updated Nov 6, 2023Nov 6, 2023
edstuto
Public
A variety of tutorials introducing some issues related to the analysis of health real world data available for researchers in clinical data warehouses.
Jupyter Notebook
•0•4•0•0•Updated Sep 29, 2023Sep 29, 2023
spark-etl
Public
Better bridge apache spark and postgresql
spark etl postgresql
Scala
•
Apache License 2.0
•8•23•1•9•Updated Sep 11, 2023Sep 11, 2023
edspdf-poppler
Public
Poppler extension for EDS-PDF
python pdf extractor bindings prebuilt poppler edspdf
Python
•
GNU General Public License v2.0
•0•0•1•0•Updated Jun 13, 2023Jun 13, 2023
edspdf-mupdf
Public
MuPDF extension for EDS-PDF
pdf extractor mupdf pymupdf edspdf
Python
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Jun 12, 2023Jun 12, 2023
HiveQLKernel
Public
HiveQL Jupyter Kernel
kernel hive jupyter notebook hiveql
Python
•
MIT License
•5•10•8•0•Updated Aug 5, 2022Aug 5, 2022
dsfaker
Public
Time series Generator
data time-series faker generation
Python
•
MIT License
•4•6•9•2•Updated Jul 15, 2022Jul 15, 2022
thinc
Public
🔮 A refreshing functional take on deep learning, compatible with your favorite libraries
Python
•
MIT License
•275•0•0•0•Updated Jul 7, 2022Jul 7, 2022
spaCy
Public
💫 Industrial-strength Natural Language Processing (NLP) in Python
Python
•
MIT License
•4.4k•0•0•0•Updated Jun 13, 2022Jun 13, 2022
SPHERE
Public
A research PACS Solution adapted to Big Data Plateform
Python
•
GNU General Public License v3.0
•0•6•0•0•Updated Feb 2, 2022Feb 2, 2022
UimaOnSpark
Public archive
Way to run Uima Pipelines on Apache Spark
spark uima
Scala
•4•10•3•1•Updated Jul 19, 2021Jul 19, 2021
uima-aphp
Public archive
A set of module for multiple NLP pipelines
Java
•
GNU General Public License v3.0
•1•2•1•1•Updated Jul 19, 2021Jul 19, 2021
py-hdfs-mount
Public archive
Mount HDFS with fuse, works with kerberos!
fuse hadoop mount hdfs kerberos mount-hdfs
Python
•8•18•0•0•Updated May 26, 2021May 26, 2021