2.2.0

What's Changed

• Add a Gitter chat badge to README.md by @gitter-badger in #376
• Update to vvta by @Peter-J-Freeman in #396
• First push for issue #392 by @Peter-J-Freeman in #403
• Update to vvta by @Peter-J-Freeman in #404
• Additional issue #393 code tweaks by @Peter-J-Freeman in #406
• Update to vvta by @Peter-J-Freeman in #407
• bug fix issue #408 by @Peter-J-Freeman in #409
• Update to vvta by @Peter-J-Freeman in #410
• add coide to clear issue https://github.com/openvar/variantValidator/… by @Peter-J-Freeman in #412
• Update to vvta by @Peter-J-Freeman in #413
• Another quick update to add a warning by @Peter-J-Freeman in #414
• Update to vvta by @Peter-J-Freeman in #415
• Update to vvta by @Peter-J-Freeman in #422
• First commit to tackle race conditions as stated in issue https://git… by @Peter-J-Freeman in #425
• Reverse require_threading so if True, check_same_thread = False by @Peter-J-Freeman in #426
• Update from bool to string for debug in https://github.com/openvar/va… by @Peter-J-Freeman in #427
• Update from bool to string for debug in https://github.com/openvar/va… by @Peter-J-Freeman in #428
• Update to vvta by @Peter-J-Freeman in #440
• bug fix for #419 an… by @Peter-J-Freeman in #443
• Added a bunch of patches in response to https://github.com/openvar/va… by @Peter-J-Freeman in #444
• Update install by @Peter-J-Freeman in #445
• New version by @Peter-J-Freeman in #447
• Develop by @Peter-J-Freeman in #448
• V3.2.0 by @Peter-J-Freeman in #449
• Develop by @Peter-J-Freeman in #450
• Jfw dev by @Peter-J-Freeman in #453
• V2.2.0 by @Peter-J-Freeman in #456
• Merge from Master by @Peter-J-Freeman in #457
• Merge pull request #457 from openvar/master by @Peter-J-Freeman in #458
• Merge pull request #458 from openvar/develop_2.2.0 by @Peter-J-Freeman in #459

New Contributors

• @gitter-badger made their first contribution in #376

Full Changelog: v2.1.0...v2.2.0

2.1.0

What's Changed

• modifications for issue #330 feature request. To use, liftover_level … by @PeteCausey-Freeman in #331
• Update to vvta by @PeteCausey-Freeman in #354
• Update to vvta by @PeteCausey-Freeman in #355
• Final fixes for issue https://github.com/openvar/variantValidator/iss… by @PeteCausey-Freeman in #356
• fixes for issue #357 by @PeteCausey-Freeman in #358
• closing #360 by @PeteCausey-Freeman in #361
• tweak tests by @PeteCausey-Freeman in #362
• Tidy up travis file by @PeteCausey-Freeman in #363
• Update travis badge logo by @PeteCausey-Freeman in #364
• Update to vvta by @PeteCausey-Freeman in #367
• Update tests prior to merge and fix for https://github.com/openvar/va… by @PeteCausey-Freeman in #368
• Additional updates relating to https://github.com/openvar/variantVali… by @PeteCausey-Freeman in #369
• Update to vvta by @PeteCausey-Freeman in #371
• quick typo fix by @PeteCausey-Freeman in #373
• update manual for installation by @PeteCausey-Freeman in #374
• Final tweaks for 2.1.0 by @PeteCausey-Freeman in #375

Full Changelog: v2.0.0...v2.1.0

2.0.0

This is a major release of VariantValidator. It replaces UTA with our own solution VVTA. We have also significantly upgraded our gapped-alignment handling code, extending the test set. See the tests documents and commits for the issue numbers we have addressed during upgrade. We have also introduced exon/intron mappings for variants thanks to @kjwinfield and @kwi11iams

Special thanks goes to @ifokkema and @jtdendunnen for providing user-stories and bug reports throughout the build.

@John-F-Wagstaff deserves a ton of credit for developing VVTA and we are looking forward to generating the next release of this data for the new year

1.0.4

Merge pull request #279 from openvar/features

Update requirements_dev.txt

1.0.3

Stable release. Deals with MySQl issues

1.0.2

Fixes bugs and sorts MySQL connections errors

Version 1.0.1

This release addresses a few minor bug fixes. It also fixes an issue with installation of Docker. The UTA build for docker is now the current release. Also added handling of Alamut style genomic variant descriptions.

Version 1.0.0

This new version features a completely re-written package and is not compatible with previous releases.

See the documentation on how to install and run this new, python 3, version of VariantValidator.

Version 0.2.5

This will likely be the final release of the original Python 2 code. Various bug fixes have been made as well as improving how the library works with UTA and NCBI data by providing a pre-populated database.

0.2 release bugfixes.

This validator fixes a few bugs, including issues with the logging.