3.3.0

New features

• Added functionality to read NIfTI-MRS files (Clarke et al., MRM, 2022) (NIfTIMRSRead.m); includes additional new function GannetMask_NIfTI.m for voxel co-registration
• Added support for Utah Siemens MEGA-PRESS sequence (DICOM files)
• Added support for CMRR PRESS data (DICOM files)
• Added support for Siemens XA30 sequence as provided by JHU
• Changed README to README.md, which now includes badges

Major changes

• Coil combination of GE, NIfTI-MRS, and Siemens TWIX files is now performed using generalized least squares (An et al., JMRI, 2013); this approach has been shown to result in optimal SNR and reduce spectral artifacts
• The Gannet logo has been reverted to the original image of a gannet

Minor changes

• Added functionality for GE data in AlignSubSpectra_PreAlignRef.m
• An error is presented if not enough inputs are given for any of the Gannet modules
• CoRegStandAlone outputs can be hidden if MRS_struct.p.hide is set to 1 in CoRegStandAlone.m (default is 0)
• If the user has no internet connection, VersionCheck.m and UpdateGannet.m will not run
• Updated dicm2nii to latest version (version 2022.09.15)
• Updated mapVBVD functions to latest version (https://github.com/pehses/mapVBVD)
• Turned off warnings of iteration limits in SpectralRegistrationHERMES.m and GannetFit.m
• Many cosmetic changes in the code

Bug fixes

• Fixed bug in error reporting in GannetFit.m
• CoRegStandAlone routines now parse version numbers from the main modules properly
• Variable filesExist in GannetSegment.m may not populate; it is now pre-initialized as a precaution
• Bug fix in GannetMask_SiemensRDA.m
• Bug fixes for reading DICOM files