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A repository regarding my BME MSc thesis on pharmacogenomics drug response ranker models

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Rank Rx

Steps to recreate exepriment.

  1. Setup environment
    conda create -n rankenv

  2. Activate environment
    conda activate rankevn

  3. Check the Anaconda Navigator > Environments, to see if the created env is activated and if not, manually select it.

  4. Install Tensorflow Ranking
    pip install -q tensorflow-ranking

  5. Check Tensorflow Ranking version, it should be Version: 0.5.5
    pip show tensorflow-ranking

  6. Check Tensorflow version, it should be Version: 2.15.1
    pip show tensorflow

  7. Check if Jupyter Notebook is installed on the created environment

  8. Launch Jupyter Notebook only after having the new environment activated guest@BIOCHEM-WORKSTATION:~$ conda activate rankenv (rankenv) guest@BIOCHEM-WORKSTATION:~$ jupyter notebook

  9. Install additional modules: pandas

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A repository regarding my BME MSc thesis on pharmacogenomics drug response ranker models

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