Skip to content

Commit

Permalink
corrected typo in wrapper
Browse files Browse the repository at this point in the history
  • Loading branch information
abyssum committed May 20, 2021
1 parent 44fa492 commit 5d0011f
Showing 1 changed file with 6 additions and 1 deletion.
7 changes: 6 additions & 1 deletion NeoFuse
Original file line number Diff line number Diff line change
Expand Up @@ -231,7 +231,7 @@ if [ "$BUILD" == "false" ]; then
VARIANTSFILE=`realpath2 $VARIANTSFILE`
MOUNTPOINT=",$VARIANTSFILE:/mnt/$(echo ${VARIANTSFILE##*/})"
else
echo "No Structural variant calls from WGS found"
echo "No Structural variant calls from WGS file found"
echo "Exiting ..."
exit 1
fi
Expand Down Expand Up @@ -354,6 +354,11 @@ if [ "$BUILD" == "false" ]; then
else
NETMHCPAN="/usr/local/bin/source/$(echo ${NETMHCPAN##*/})"
fi
if [ "$VARIANTSFILE" != "false" ]; then
VARIANTSFILE="/mnt/$(echo ${VARIANTSFILE##*/})"
else
:
fi

## Check for Docker/singularity installation and launch
if [ "$IMAGE" == "docker" ]; then
Expand Down

0 comments on commit 5d0011f

Please sign in to comment.