chore: dev to master #178

	name: Snakemake dry run

	# Controls when the action will run.
	on:
	# Triggers the workflow on push or pull request events but only for the master and develop branch
	push:
	branches:
	- develop
	- master
	pull_request:
	branches:
	- develop
	- master

	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	jobs:
	snakemake-dry-run:
	name: Run snakemake dry run
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python 3.8
	uses: actions/setup-python@v2
	with:
	python-version: 3.8
	- name: Setup Mambaforge
	uses: conda-incubator/setup-miniconda@v2
	with:
	miniforge-variant: Mambaforge
	miniforge-version: latest
	activate-environment: my-env
	use-mamba: true
	- name: Add conda to system path
	run: \|
	echo $CONDA/bin >> $GITHUB_PATH
	- name: Install requirements.txt
	run: \|
	pip install -r requirements.txt
	- name: Install requirements.test.txt
	run: \|
	pip install -r requirements.test.txt
	- name: snakemake dry run
	working-directory: .tests/integration
	run: \|
	mamba install -c conda-forge -c bioconda snakemake singularity
	snakemake -n -s ../../workflow/Snakefile --configfile config/config.yaml

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