Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Update integration test goldens #4753

Merged
merged 1 commit into from
Nov 22, 2024
+185 −153
Merged

Update integration test goldens #4753

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
15 changes: 5 additions & 10 deletions ...n_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json
View file
Open in desktop

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion .../test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -66,7 +66,7 @@
{
"CosineScore": [
0.794237,
0.792902
0.792901
],
"QueryPart": "show climate",
"SV": [
Expand Down
166 changes: 156 additions & 10 deletions ...test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317/chart_config.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,16 +12,160 @@
"answerTableTileSpec": {
"columns": [
{
"header": "Full Name",
"propertyExpr": "->fullName"
"header": "Abbreviation",
"propertyExpr": "->abbreviation"
},
{
"header": "Alternate Name",
"propertyExpr": "->alternateName"
},
{
"header": "Biological Host",
"propertyExpr": "->biologicalHost"
},
{
"header": "Date Created",
"propertyExpr": "->dateCreated"
},
{
"header": "Date Established",
"propertyExpr": "->dateEstablished"
},
{
"header": "Date Revised",
"propertyExpr": "->dateRevised"
},
{
"header": "Has Inherited Divsion",
"propertyExpr": "->hasInheritedDivsion"
},
{
"header": "Has MeSH Qualifier",
"propertyExpr": "->hasMeSHQualifier"
},
{
"header": "Identifier",
"propertyExpr": "->identifier"
},
{
"header": "Medical Subject Heading Tree Number",
"propertyExpr": "->medicalSubjectHeadingTreeNumber"
},
{
"header": "Name",
"propertyExpr": "->name"
},
{
"header": "Ncbi Tax Id",
"propertyExpr": "->ncbiTaxId"
},
{
"header": "Proposal For Last Change",
"propertyExpr": "->proposalForLastChange"
},
{
"header": "Provenance",
"propertyExpr": "->provenance"
},
{
"header": "Scientific Name",
"propertyExpr": "->scientificName"
},
{
"header": "Scope Note",
"propertyExpr": "->scopeNote"
},
{
"header": "Specialization Of",
"propertyExpr": "->specializationOf"
},
{
"header": "Taxon Division",
"propertyExpr": "->taxonDivision"
},
{
"header": "Taxon History URL",
"propertyExpr": "->taxonHistoryURL"
},
{
"header": "Taxon Rank",
"propertyExpr": "->taxonRank"
},
{
"header": "Taxon Top Level Category",
"propertyExpr": "->taxonTopLevelCategory"
},
{
"header": "Type Of",
"propertyExpr": "->typeOf"
},
{
"header": "Version Of Last Change",
"propertyExpr": "->versionOfLastChange"
},
{
"header": "Virus Class",
"propertyExpr": "->virusClass"
},
{
"header": "Virus Family",
"propertyExpr": "->virusFamily"
},
{
"header": "Virus Genome Composition",
"propertyExpr": "->virusGenomeComposition"
},
{
"header": "Virus Genus",
"propertyExpr": "->virusGenus"
},
{
"header": "Virus Host",
"propertyExpr": "->virusHost"
},
{
"header": "Virus Kingdom",
"propertyExpr": "->virusKingdom"
},
{
"header": "Virus Last Taxonomic Change",
"propertyExpr": "->virusLastTaxonomicChange"
},
{
"header": "Virus Order",
"propertyExpr": "->virusOrder"
},
{
"header": "Virus Phylum",
"propertyExpr": "->virusPhylum"
},
{
"header": "Virus Realm",
"propertyExpr": "->virusRealm"
},
{
"header": "Virus Species",
"propertyExpr": "->virusSpecies"
},
{
"header": "Virus Subfamily",
"propertyExpr": "->virusSubfamily"
},
{
"header": "Virus Subgenus",
"propertyExpr": "->virusSubgenus"
},
{
"header": "Virus Suborder",
"propertyExpr": "->virusSuborder"
}
]
},
"entities": [
"bio/ncbi_59246804",
"bio/ncbi_59275321"
"bio/Betacoronavirus1",
"bio/D000073641"
],
"title": "The Full Name for are are as follows:",
"title": "Here are all the properties for Betacoronavirus 1",
"type": "ANSWER_TABLE"
}
]
Expand All @@ -36,13 +180,13 @@
"debug": {},
"entities": [
{
"dcid": "bio/ncbi_59246804",
"name": "are",
"dcid": "bio/Betacoronavirus1",
"name": "Betacoronavirus 1",
"type": ""
},
{
"dcid": "bio/ncbi_59275321",
"name": "are",
"dcid": "bio/D000073641",
"name": "Betacoronavirus 1",
"type": ""
}
],
Expand All @@ -62,5 +206,7 @@
"peerTopics": []
},
"svSource": "UNKNOWN",
"userMessages": []
"userMessages": [
"See relevant information for Betacoronavirus 1 based on the previous query."
]
}
44 changes: 22 additions & 22 deletions ...e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,20 +9,28 @@
{
"tiles": [
{
"answerTableTileSpec": {
"columns": [
{
"header": "Full Name",
"propertyExpr": "->fullName"
}
]
"answerMessageTileSpec": {
"propertyExpr": "<-geneticVariantID{typeOf:DiseaseGeneticVariantAssociation}->diseaseID"
},
"entities": [
"bio/ncbi_59246804",
"bio/ncbi_59275321"
"bio/rs7903146"
],
"title": "The Full Name for are are as follows:",
"type": "ANSWER_TABLE"
"title": "The associated diseases for rs7903146 are",
"type": "ANSWER_MESSAGE"
}
]
}
]
},
{
"columns": [
{
"tiles": [
{
"entities": [
"bio/rs7903146"
],
"type": "ENTITY_OVERVIEW"
}
]
}
Expand All @@ -35,16 +43,6 @@
"context": {},
"debug": {},
"entities": [
{
"dcid": "bio/ncbi_59246804",
"name": "are",
"type": ""
},
{
"dcid": "bio/ncbi_59275321",
"name": "are",
"type": ""
},
{
"dcid": "bio/rs7903146",
"name": "rs7903146",
Expand All @@ -67,5 +65,7 @@
"peerTopics": []
},
"svSource": "UNKNOWN",
"userMessages": []
"userMessages": [
"Low confidence in understanding your query. Displaying the closest results."
]
}
111 changes: 1 addition & 110 deletions ...ation_tests/test_data/e2e_triple/whatvirusspeciesarers13317andrs7903146/chart_config.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,109 +9,10 @@
{
"tiles": [
{
"answerTableTileSpec": {
"columns": [
{
"header": "Chrom",
"propertyExpr": "->chrom"
},
{
"header": "Clinical Annotation Count",
"propertyExpr": "->clinicalAnnotationCount"
},
{
"header": "Clinical Annotation Count Level1_2",
"propertyExpr": "->clinicalAnnotationCountLevel1_2"
},
{
"header": "Clinical Guideline Annotation Count",
"propertyExpr": "->clinicalGuidelineAnnotationCount"
},
{
"header": "Cytogenetic Map Location",
"propertyExpr": "->cytogeneticMapLocation"
},
{
"header": "Date Modified",
"propertyExpr": "->dateModified"
},
{
"header": "Description",
"propertyExpr": "->description"
},
{
"header": "Drug Label Annotation Count",
"propertyExpr": "->drugLabelAnnotationCount"
},
{
"header": "Full Name",
"propertyExpr": "->fullName"
},
{
"header": "Gene Symbol",
"propertyExpr": "->geneSymbol"
},
{
"header": "Genetic Variant Annotation Count",
"propertyExpr": "->geneticVariantAnnotationCount"
},
{
"header": "Has Genomic Coordinates",
"propertyExpr": "->hasGenomicCoordinates"
},
{
"header": "Name",
"propertyExpr": "->name"
},
{
"header": "Ncbi Gene ID",
"propertyExpr": "->ncbiGeneID"
},
{
"header": "Ncbi Sequence Gi Number",
"propertyExpr": "->ncbiSequenceGiNumber"
},
{
"header": "Of Species",
"propertyExpr": "->ofSpecies"
},
{
"header": "Pharm GKBID",
"propertyExpr": "->pharmGKBID"
},
{
"header": "Provenance",
"propertyExpr": "->provenance"
},
{
"header": "Pub Med ID",
"propertyExpr": "->pubMedID"
},
{
"header": "Ref Seq Genomic Accession",
"propertyExpr": "->refSeqGenomicAccession"
},
{
"header": "Rs ID",
"propertyExpr": "->rsID"
},
{
"header": "Synonym",
"propertyExpr": "->synonym"
},
{
"header": "Type Of",
"propertyExpr": "->typeOf"
}
]
},
"entities": [
"bio/ncbi_59246804",
"bio/ncbi_59275321",
"bio/rs7903146"
],
"title": "Here are all the properties for are and rs7903146",
"type": "ANSWER_TABLE"
"type": "ENTITY_OVERVIEW"
}
]
}
Expand All @@ -124,16 +25,6 @@
"context": {},
"debug": {},
"entities": [
{
"dcid": "bio/ncbi_59246804",
"name": "are",
"type": ""
},
{
"dcid": "bio/ncbi_59275321",
"name": "are",
"type": ""
},
{
"dcid": "bio/rs7903146",
"name": "rs7903146",
Expand Down