Add extra args to collate to handle edge cases [WIP]

[bethac07]

Description

Collate handles the standard cases pretty well at this point, but there are a number of edge cases I've been writing extra code in my own fork to handle; it would be nice to add first-class support

What is the nature of your change?

• Enhancement (adds functionality).
• This change requires a documentation update.

Checklist

Please ensure that all boxes are checked before indicating that a pull request is ready for review.

• I have read the CONTRIBUTING.md guidelines.
• My code follows the style guidelines of this project.
• I have performed a self-review of my own code.
• I have commented my code, particularly in hard-to-understand areas.
• I have made corresponding changes to the documentation.
• My changes generate no new warnings.
• New and existing unit tests pass locally with my changes.
• I have added tests that prove my fix is effective or that my feature works.
• I have deleted all non-relevant text in this pull request template.

[codecov-commenter]

Codecov Report

Merging #302 (d4147cd) into master (7320516) will decrease coverage by 0.98%.
The diff coverage is 7.69%.

@@            Coverage Diff             @@
##           master     #302      +/-   ##
==========================================
- Coverage   95.12%   94.14%   -0.98%     
==========================================
  Files          57       57              
  Lines        3057     3092      +35     
==========================================
+ Hits         2908     2911       +3     
- Misses        149      181      +32     

Flag	Coverage Δ
unittests	94.14% <7.69%> (-0.98%)	⬇️

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Impacted Files	Coverage Δ
pycytominer/cyto_utils/collate_cmd.py	0.00% <0.00%> (ø)
pycytominer/cyto_utils/collate.py	43.65% <8.57%> (-11.09%)	⬇️

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[d33bs]

Hello, this is a courtesy notice that Pcytominer's master branch has been renamed to main as part of changes merged in #303. While changes here should be seamless, GitHub is unable to change your local git environment and offers the following guidance when it comes to this. Thank you for your understanding and please don't hesitate to reach out with any questions or concerns.