Skip to content

Issues: common-workflow-language/cwl-utils

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

27 Open 34 Closed
27 Open 34 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

CWL steps given in alphabetical order rather than the order in the CWL file
#326 opened Oct 19, 2024 by Ambivalentalfa
new command: cwl-summary
#314 opened Aug 19, 2024 by mr-c
Parser does not support cwltool extensions
#309 opened Jul 16, 2024 by stxue1
cwl-graph-split causes some odd errors for a packed pipeline
#286 opened Feb 13, 2024 by alexiswl
ruamel.yaml doesn't support yaml.dump()
#285 opened Feb 13, 2024 by alexiswl
1
1
Proposal for a Function to Generate JSON Schema for Workflow Parameter Files
#273 opened Jan 14, 2024 by suecharo
3
Inconsistent type attribute in CommandInputParameter
#271 opened Dec 19, 2023 by camilovelezr
New tests needed to catch future regressions
#260 opened Nov 13, 2023 by mr-c
test & support apptainer in addition to singularity-ce
#185 opened Nov 28, 2022 by mr-c
test __eq__ & __hash__ with load/save of all CWL conformance tests
#168 opened Sep 13, 2022 by mr-c
add utilities to help with parsing CWL Parameter References
#162 opened Sep 8, 2022 by mr-c
1
docker_extract.py is not handling relative directories very well.
#157 opened Sep 1, 2022 by golharam
1
TypeError: 'NoneType' object is not callable in NodeJSEngine.__del__()
#137 opened Aug 3, 2022 by mr-c
[Feature Request] utility function to access nested fields
#106 opened Oct 2, 2021 by tom-tan
1
new feature: implement cwltool --target / --single-{step,process} --print-{subgraph,target}
#92 opened Sep 4, 2021 by mr-c
Subtree of workflow is updated only to v1.1
#89 opened Jul 12, 2021 by BJWiley233
Documentation for importing packed files
#71 opened Apr 15, 2021 by alexiswl
10
Fix https://cwl-utils.readthedocs.io/
#57 opened Feb 9, 2021 by nyue
7
expr refactor new feature: consolidate generated ExpressionTool/CommandLineTools
#49 opened Dec 2, 2020 by mr-c
expr refactor: download conformance tests and process & run them
#45 opened Nov 12, 2020 by mr-c
1 task
expr refactor: pickValue on a Workflow step input
#44 opened Nov 12, 2020 by mr-c
container image puller: consider using https://github.com/biowdl/prepull-singularity
#35 opened Sep 30, 2020 by mr-c
schema_salad.exceptions.ValidationExceptions parsing certain data structures
#31 opened Sep 4, 2020 by leipzig
@leipzig
12
document release process
#22 opened Jun 13, 2020 by mr-c
@illusional
3
Request: tool to replace simple docker references with digests
#19 opened Jun 10, 2020 by mr-c
4
ProTip! What’s not been updated in a month: updated:<2024-10-25.