Netbooks is a webserver that hosts many uses cases related to gene regulatory networks using the Network Zoo. These use cases span gene regulatory network inference and reconstruction, community detection, network analysis applied to different types of cancer, drug repurposing, and sex-specific regulation.
The webserver is built using Jupyter Hub and includes R and Python kernels.
You can access Netbooks through the web interface, or you can clone this GitHub repository to run the notebooks on your machine.
On the webserver, you can create new cells in each notebook to do extra analysis on specific use case, however, please make sure to save your work before closing the session, otherwise the work is lost.
If you are intrested in having a permanent user space, consider uploading the notebooks to google colab.
If you have any issue or suggestion, please open an issue in the GitHub repository.