Fix tests

cBioPortal · Oct 31, 2024 · f3f08fb · f3f08fb
1 parent c2cbb82
commit f3f08fb
Showing 1 changed file with 7 additions and 1 deletion.
diff --git a/tests/unit_tests_validate_data.py b/tests/unit_tests_validate_data.py
@@ -2023,9 +2023,15 @@ def test_missing_values(self):
         self.logger.setLevel(logging.ERROR)
         record_list = self.validate('data_structural_variants_missing_values.txt',
                                     validateData.StructuralVariantValidator)
-        self.assertEqual(2, len(record_list))
+        self.assertEqual(3, len(record_list))
         record_iterator = iter(record_list)
 
+        # Expected first error due to a SV_Status being empty
+        record = next(record_iterator)
+        self.assertEqual(logging.ERROR, record.levelno)
+        self.assertEqual(3, record.line_number)
+        self.assertIn("Invalid SV_Status value: possible values are [SOMATIC, GERMLINE]", record.message)
+
         # Expected ERROR message due to missing Entrez gene id and/or gene symbol at site 1 and site 2
         record = next(record_iterator)
         self.assertEqual(logging.ERROR, record.levelno)