chore: fix incompatible return value type

arkhn · Oct 25, 2024 · 2ee1254 · 2ee1254
1 parent 1dd3c71
commit 2ee1254
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diff --git a/lib/questions_eval/configs/run_mimoracle.yaml b/lib/questions_eval/configs/run_mimoracle.yaml
@@ -10,9 +10,8 @@ dataset: "/Users/hanh.tran/Desktop/open-nlp/lib/questions_eval/data_sample/mimor
 
 prompts:
   summary: >-
-    As a clinician assistant, you must write a summary for a specified section in clinical report given these patients information.
-    section_title: {section_title}
-    text: {text}
+    As a clinician assistant, you must write a summary for a specified section in clinical report
+    given these patients information. section_title: {section_title} text: {text}
 
     Synthetic Summary:
 
@@ -40,6 +39,6 @@ prompts:
 
     Document : {summary}
 
-    Question : {question} 
-    
+    Question : {question}
+
     Answer:
diff --git a/lib/questions_eval/data_sample/mimoracle_train_sample.csv b/lib/questions_eval/data_sample/mimoracle_train_sample.csv
@@ -146846,32 +146846,32 @@ outpatient counseling and adjustment of medications
 
 
 Medications on Admission:
-amlodipine 10 mg Tablet daily	
+amlodipine 10 mg Tablet daily
 B complex-vitamin C-folic acid [[**Location (un) **] Caps] 1 mg Capsule) by
 mouth once a day
 Benzonatate 100 mg 1 Capsule(s) by mouth three times a day as
-needed for cough	
+needed for cough
 Bupropion HCl 150 mg 1 Tablet(s) by mouth
 Monday/Wednesday/Friday only take after hemodialysis
 Carvedilol 25 mg 1 Tablet(s) by mouth twice a day
 Gabapentin 300 mg Capsule by mouth q48hr
 Glucagon (human recombinant) [Glucagon Emergency] 1 mg Kit use
 as needed prn
 Hydroxyzine HCl 25 mg 1 Tablet(s) by mouth every six (6) hours
-as needed for pruritus	
+as needed for pruritus
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen inject
 per sliding scale four times a day or as directed ; max 12u for
 BG >400
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen per sl
 sc prn
 Lorazepam 1 mg Tablet by mouth three times weekly before
-dialysis as needed for anxiety	
+dialysis as needed for anxiety
 Omeprazole 20 mg Capsule, Delayed Release(E.C.) 1 Capsule(s) by
 mouth twice a day
 Oxycodone 10 mg Tablet by mouth up to tid as needed for severe
 pain
 Simvastatin 5 mg Tablet by mouth once a day (Prescribed by Other
-Provider)	 	 	 	 	 	 	
+Provider)
 acetaminophen [APAP] 325 mg Tablet 1 Tablet(s) by mouth prn
 aspirin [Aspir-81] 81 mg Tablet, Delayed Release (E.C.) by mouth
 daily
@@ -147391,32 +147391,32 @@ outpatient counseling and adjustment of medications
 
 
 Medications on Admission:
-amlodipine 10 mg Tablet daily	
+amlodipine 10 mg Tablet daily
 B complex-vitamin C-folic acid [[**Location (un) **] Caps] 1 mg Capsule) by
 mouth once a day
 Benzonatate 100 mg 1 Capsule(s) by mouth three times a day as
-needed for cough	
+needed for cough
 Bupropion HCl 150 mg 1 Tablet(s) by mouth
 Monday/Wednesday/Friday only take after hemodialysis
 Carvedilol 25 mg 1 Tablet(s) by mouth twice a day
 Gabapentin 300 mg Capsule by mouth q48hr
 Glucagon (human recombinant) [Glucagon Emergency] 1 mg Kit use
 as needed prn
 Hydroxyzine HCl 25 mg 1 Tablet(s) by mouth every six (6) hours
-as needed for pruritus	
+as needed for pruritus
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen inject
 per sliding scale four times a day or as directed ; max 12u for
 BG >400
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen per sl
 sc prn
 Lorazepam 1 mg Tablet by mouth three times weekly before
-dialysis as needed for anxiety	
+dialysis as needed for anxiety
 Omeprazole 20 mg Capsule, Delayed Release(E.C.) 1 Capsule(s) by
 mouth twice a day
 Oxycodone 10 mg Tablet by mouth up to tid as needed for severe
 pain
 Simvastatin 5 mg Tablet by mouth once a day (Prescribed by Other
-Provider)	 	 	 	 	 	 	
+Provider)
 acetaminophen [APAP] 325 mg Tablet 1 Tablet(s) by mouth prn
 aspirin [Aspir-81] 81 mg Tablet, Delayed Release (E.C.) by mouth
 daily
@@ -147969,32 +147969,32 @@ outpatient counseling and adjustment of medications
 
 
 Medications on Admission:
-amlodipine 10 mg Tablet daily	
+amlodipine 10 mg Tablet daily
 B complex-vitamin C-folic acid [[**Location (un) **] Caps] 1 mg Capsule) by
 mouth once a day
 Benzonatate 100 mg 1 Capsule(s) by mouth three times a day as
-needed for cough	
+needed for cough
 Bupropion HCl 150 mg 1 Tablet(s) by mouth
 Monday/Wednesday/Friday only take after hemodialysis
 Carvedilol 25 mg 1 Tablet(s) by mouth twice a day
 Gabapentin 300 mg Capsule by mouth q48hr
 Glucagon (human recombinant) [Glucagon Emergency] 1 mg Kit use
 as needed prn
 Hydroxyzine HCl 25 mg 1 Tablet(s) by mouth every six (6) hours
-as needed for pruritus	
+as needed for pruritus
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen inject
 per sliding scale four times a day or as directed ; max 12u for
 BG >400
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen per sl
 sc prn
 Lorazepam 1 mg Tablet by mouth three times weekly before
-dialysis as needed for anxiety	
+dialysis as needed for anxiety
 Omeprazole 20 mg Capsule, Delayed Release(E.C.) 1 Capsule(s) by
 mouth twice a day
 Oxycodone 10 mg Tablet by mouth up to tid as needed for severe
 pain
 Simvastatin 5 mg Tablet by mouth once a day (Prescribed by Other
-Provider)	 	 	 	 	 	 	
+Provider)
 acetaminophen [APAP] 325 mg Tablet 1 Tablet(s) by mouth prn
 aspirin [Aspir-81] 81 mg Tablet, Delayed Release (E.C.) by mouth
 daily
@@ -148523,32 +148523,32 @@ outpatient counseling and adjustment of medications
 
 
 Medications on Admission:
-amlodipine 10 mg Tablet daily	
+amlodipine 10 mg Tablet daily
 B complex-vitamin C-folic acid [[**Location (un) **] Caps] 1 mg Capsule) by
 mouth once a day
 Benzonatate 100 mg 1 Capsule(s) by mouth three times a day as
-needed for cough	
+needed for cough
 Bupropion HCl 150 mg 1 Tablet(s) by mouth
 Monday/Wednesday/Friday only take after hemodialysis
 Carvedilol 25 mg 1 Tablet(s) by mouth twice a day
 Gabapentin 300 mg Capsule by mouth q48hr
 Glucagon (human recombinant) [Glucagon Emergency] 1 mg Kit use
 as needed prn
 Hydroxyzine HCl 25 mg 1 Tablet(s) by mouth every six (6) hours
-as needed for pruritus	
+as needed for pruritus
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen inject
 per sliding scale four times a day or as directed ; max 12u for
 BG >400
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen per sl
 sc prn
 Lorazepam 1 mg Tablet by mouth three times weekly before
-dialysis as needed for anxiety	
+dialysis as needed for anxiety
 Omeprazole 20 mg Capsule, Delayed Release(E.C.) 1 Capsule(s) by
 mouth twice a day
 Oxycodone 10 mg Tablet by mouth up to tid as needed for severe
 pain
 Simvastatin 5 mg Tablet by mouth once a day (Prescribed by Other
-Provider)	 	 	 	 	 	 	
+Provider)
 acetaminophen [APAP] 325 mg Tablet 1 Tablet(s) by mouth prn
 aspirin [Aspir-81] 81 mg Tablet, Delayed Release (E.C.) by mouth
 daily
@@ -149070,32 +149070,32 @@ outpatient counseling and adjustment of medications
 
 
 Medications on Admission:
-amlodipine 10 mg Tablet daily	
+amlodipine 10 mg Tablet daily
 B complex-vitamin C-folic acid [[**Location (un) **] Caps] 1 mg Capsule) by
 mouth once a day
 Benzonatate 100 mg 1 Capsule(s) by mouth three times a day as
-needed for cough	
+needed for cough
 Bupropion HCl 150 mg 1 Tablet(s) by mouth
 Monday/Wednesday/Friday only take after hemodialysis
 Carvedilol 25 mg 1 Tablet(s) by mouth twice a day
 Gabapentin 300 mg Capsule by mouth q48hr
 Glucagon (human recombinant) [Glucagon Emergency] 1 mg Kit use
 as needed prn
 Hydroxyzine HCl 25 mg 1 Tablet(s) by mouth every six (6) hours
-as needed for pruritus	
+as needed for pruritus
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen inject
 per sliding scale four times a day or as directed ; max 12u for
 BG >400
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen per sl
 sc prn
 Lorazepam 1 mg Tablet by mouth three times weekly before
-dialysis as needed for anxiety	
+dialysis as needed for anxiety
 Omeprazole 20 mg Capsule, Delayed Release(E.C.) 1 Capsule(s) by
 mouth twice a day
 Oxycodone 10 mg Tablet by mouth up to tid as needed for severe
 pain
 Simvastatin 5 mg Tablet by mouth once a day (Prescribed by Other
-Provider)	 	 	 	 	 	 	
+Provider)
 acetaminophen [APAP] 325 mg Tablet 1 Tablet(s) by mouth prn
 aspirin [Aspir-81] 81 mg Tablet, Delayed Release (E.C.) by mouth
 daily
@@ -149252,32 +149252,32 @@ You will be followed by your Nephrologist at hemodialysis.
 
 
 
-Completed by:[**2185-6-3**]",medications on admission,"amlodipine 10 mg Tablet daily	
+Completed by:[**2185-6-3**]",medications on admission,"amlodipine 10 mg Tablet daily
 B complex-vitamin C-folic acid [[**Location (un) **] Caps] 1 mg Capsule) by
 mouth once a day
 Benzonatate 100 mg 1 Capsule(s) by mouth three times a day as
-needed for cough	
+needed for cough
 Bupropion HCl 150 mg 1 Tablet(s) by mouth
 Monday/Wednesday/Friday only take after hemodialysis
 Carvedilol 25 mg 1 Tablet(s) by mouth twice a day
 Gabapentin 300 mg Capsule by mouth q48hr
 Glucagon (human recombinant) [Glucagon Emergency] 1 mg Kit use
 as needed prn
 Hydroxyzine HCl 25 mg 1 Tablet(s) by mouth every six (6) hours
-as needed for pruritus	
+as needed for pruritus
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen inject
 per sliding scale four times a day or as directed ; max 12u for
 BG >400
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen per sl
 sc prn
 Lorazepam 1 mg Tablet by mouth three times weekly before
-dialysis as needed for anxiety	
+dialysis as needed for anxiety
 Omeprazole 20 mg Capsule, Delayed Release(E.C.) 1 Capsule(s) by
 mouth twice a day
 Oxycodone 10 mg Tablet by mouth up to tid as needed for severe
 pain
 Simvastatin 5 mg Tablet by mouth once a day (Prescribed by Other
-Provider)	 	 	 	 	 	 	
+Provider)
 acetaminophen [APAP] 325 mg Tablet 1 Tablet(s) by mouth prn
 aspirin [Aspir-81] 81 mg Tablet, Delayed Release (E.C.) by mouth
 daily
@@ -149648,32 +149648,32 @@ outpatient counseling and adjustment of medications
 
 
 Medications on Admission:
-amlodipine 10 mg Tablet daily	
+amlodipine 10 mg Tablet daily
 B complex-vitamin C-folic acid [[**Location (un) **] Caps] 1 mg Capsule) by
 mouth once a day
 Benzonatate 100 mg 1 Capsule(s) by mouth three times a day as
-needed for cough	
+needed for cough
 Bupropion HCl 150 mg 1 Tablet(s) by mouth
 Monday/Wednesday/Friday only take after hemodialysis
 Carvedilol 25 mg 1 Tablet(s) by mouth twice a day
 Gabapentin 300 mg Capsule by mouth q48hr
 Glucagon (human recombinant) [Glucagon Emergency] 1 mg Kit use
 as needed prn
 Hydroxyzine HCl 25 mg 1 Tablet(s) by mouth every six (6) hours
-as needed for pruritus	
+as needed for pruritus
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen inject
 per sliding scale four times a day or as directed ; max 12u for
 BG >400
 Insulin aspart [Novolog Flexpen] 100 unit/mL Insulin Pen per sl
 sc prn
 Lorazepam 1 mg Tablet by mouth three times weekly before
-dialysis as needed for anxiety	
+dialysis as needed for anxiety
 Omeprazole 20 mg Capsule, Delayed Release(E.C.) 1 Capsule(s) by
 mouth twice a day
 Oxycodone 10 mg Tablet by mouth up to tid as needed for severe
 pain
 Simvastatin 5 mg Tablet by mouth once a day (Prescribed by Other
-Provider)	 	 	 	 	 	 	
+Provider)
 acetaminophen [APAP] 325 mg Tablet 1 Tablet(s) by mouth prn
 aspirin [Aspir-81] 81 mg Tablet, Delayed Release (E.C.) by mouth
 daily
@@ -213385,7 +213385,7 @@ LEUKOCYTES.
 
    ANAEROBIC CULTURE (Preliminary):    NO GROWTH.
 
-[**2167-10-3**] 	BLOOD CULTURE pending 	
+[**2167-10-3**] 	BLOOD CULTURE pending
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
 BOTTLE-PENDING 	INPATIENT
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
@@ -213760,7 +213760,7 @@ LEUKOCYTES.
 
    ANAEROBIC CULTURE (Preliminary):    NO GROWTH.
 
-[**2167-10-3**] 	BLOOD CULTURE pending 	
+[**2167-10-3**] 	BLOOD CULTURE pending
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
 BOTTLE-PENDING 	INPATIENT
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
@@ -214152,7 +214152,7 @@ LEUKOCYTES.
 
    ANAEROBIC CULTURE (Preliminary):    NO GROWTH.
 
-[**2167-10-3**] 	BLOOD CULTURE pending 	
+[**2167-10-3**] 	BLOOD CULTURE pending
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
 BOTTLE-PENDING 	INPATIENT
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
@@ -214542,7 +214542,7 @@ LEUKOCYTES.
 
    ANAEROBIC CULTURE (Preliminary):    NO GROWTH.
 
-[**2167-10-3**] 	BLOOD CULTURE pending 	
+[**2167-10-3**] 	BLOOD CULTURE pending
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
 BOTTLE-PENDING 	INPATIENT
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
@@ -214917,7 +214917,7 @@ LEUKOCYTES.
 
    ANAEROBIC CULTURE (Preliminary):    NO GROWTH.
 
-[**2167-10-3**] 	BLOOD CULTURE pending 	
+[**2167-10-3**] 	BLOOD CULTURE pending
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
 BOTTLE-PENDING 	INPATIENT
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
@@ -215296,7 +215296,7 @@ LEUKOCYTES.
 
    ANAEROBIC CULTURE (Preliminary):    NO GROWTH.
 
-[**2167-10-3**] 	BLOOD CULTURE pending 	
+[**2167-10-3**] 	BLOOD CULTURE pending
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
 BOTTLE-PENDING 	INPATIENT
 [**2167-10-1**] 	BLOOD CULTURE 	AEROBIC BOTTLE-PENDING; ANAEROBIC
@@ -282735,7 +282735,7 @@ Non-contributory
 
 Physical Exam:
 Vitals	T	95.5	P	75	BP	70/48	Resp	20 96%RA
-	
+
 Gen	Alert, oriented, cooperative male in NAD
 HEENT	PERRLA, MMM, OP clear
 Neck	JVD at 15 cm, no lymphadenopathy or thyromegally
@@ -282990,7 +282990,7 @@ Non-contributory
 
 Physical Exam:
 Vitals	T	95.5	P	75	BP	70/48	Resp	20 96%RA
-	
+
 Gen	Alert, oriented, cooperative male in NAD
 HEENT	PERRLA, MMM, OP clear
 Neck	JVD at 15 cm, no lymphadenopathy or thyromegally
@@ -283264,7 +283264,7 @@ Non-contributory
 
 Physical Exam:
 Vitals	T	95.5	P	75	BP	70/48	Resp	20 96%RA
-	
+
 Gen	Alert, oriented, cooperative male in NAD
 HEENT	PERRLA, MMM, OP clear
 Neck	JVD at 15 cm, no lymphadenopathy or thyromegally
@@ -283528,7 +283528,7 @@ Non-contributory
 
 Physical Exam:
 Vitals	T	95.5	P	75	BP	70/48	Resp	20 96%RA
-	
+
 Gen	Alert, oriented, cooperative male in NAD
 HEENT	PERRLA, MMM, OP clear
 Neck	JVD at 15 cm, no lymphadenopathy or thyromegally
@@ -283783,7 +283783,7 @@ Non-contributory
 
 Physical Exam:
 Vitals	T	95.5	P	75	BP	70/48	Resp	20 96%RA
-	
+
 Gen	Alert, oriented, cooperative male in NAD
 HEENT	PERRLA, MMM, OP clear
 Neck	JVD at 15 cm, no lymphadenopathy or thyromegally
@@ -284038,7 +284038,7 @@ Non-contributory
 
 Physical Exam:
 Vitals	T	95.5	P	75	BP	70/48	Resp	20 96%RA
-	
+
 Gen	Alert, oriented, cooperative male in NAD
 HEENT	PERRLA, MMM, OP clear
 Neck	JVD at 15 cm, no lymphadenopathy or thyromegally