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rustlang implementation for accessing ena for any datasets.

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applicativesystem/ena-rust-crate

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ena-rust-crate

  • a rustlang command line application to access ena and download files asynchronously.
  • made for high performance computing where you can put the project numbers and links will be ready.
  • just specify the project number and your files will be ready.
  • the crate is available from crates.io at the following ena-rust-crate
cargo install --path . 
or 
cargo build 

╭─gauavsablok@gauravsablok ~/Desktop/rust/ena-rust on main ✘
╰$ ./target/release/rust-ena PRJEB55343
PRJEB55343           100% [====================>]     688     --.-KB/s
                          [Files: 1  Bytes: 688 ]
wget ftp.sra.ebi.ac.uk/vol1/fastq/ERR100/071/ERR10084071/ERR10084071_1.fastq.gz
wget ftp.sra.ebi.ac.uk/vol1/fastq/ERR100/071/ERR10084071/ERR10084071_2.fastq.gz
wget ftp.sra.ebi.ac.uk/vol1/fastq/ERR100/064/ERR10077564/ERR10077564.fastq.gz

Gaurav Sablok