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Little tool for snakemake's --cluster-status argument for use with SLURM

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slurm-cluster-status

Little tool to be used as argument to Snakemake's --cluster-status argument in a SLURM setting.

Input must be the batch ID.

Output will be a string that is either:

  1. running
  2. success
  3. failed

Example

$ snakemake --cluster 'sbatch --parsable' \
  --cluster-status './slurm-cluster-status.py'

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Little tool for snakemake's --cluster-status argument for use with SLURM

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