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Point to the subsample configuration
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Redmar-van-den-Berg committed Jan 28, 2022
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Expand Up @@ -38,7 +38,7 @@ table](https://github.com/LUMC/freebayes-snakemake/blob/main/tests/pep/samples.c
If you have multiple read pairs per sample, you can also specify a [subsample
table](https://github.com/LUMC/freebayes-snakemake/blob/main/tests/pep/subsamples.csv),
with one line for each read pair
([example](https://github.com/LUMC/freebayes-snakemake/blob/main/tests/pep/subsamples.csv)).
([example](https://github.com/LUMC/freebayes-snakemake/blob/main/tests/pep/project_subsamples.yaml)).

## Run the pipeline
Use the following commands to activate the conda environment for the pipeline,
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