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Releases: LUMC/fastq-filter

Release 0.3.0

01 Jun 15:06
4cbfde3
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  • Improved performance by:
    • Slight rewrites in the multiple FASTQ pipeline. Cases with one, two, three
      and multiple FASTQ files are now handled separately. This vastly improves
      the speed of especially the single and paired end instances.
    • Rewriting the filters in C.
  • Added logging with basic stats. When --verbose is set, the counts for
    individual filters are reported. With --quiet logging can be turned off.

Release 0.2.0

27 May 12:34
989f8b1
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  • Add ability for filtering paired sequences.
  • The minimum dnaio version requirement was bumped to 0.9.0.
  • Drop Python 3.6 support as Python 3.6 is end of life.
  • Filters are now applied by command flags. This is easier to understand than
    the previous method (which selected methods using strings). It is also
    easier to program and document.

v0.1.1: 0.1.1

29 Dec 08:08
12e6a76
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+ Various documentation fixes
+ Include a galaxy wrapper

v0.1.0: 0.1.0 First release

29 Dec 08:08
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+ Use a lookup table for faster quality lookup
+ Add checking to ensure all quality values are correct.
+ Create a fastq-filter program with functions for length, mean quality and
  median quality filtering.