updated docs for V3.10.0

GuyTeichman · Oct 30, 2023 · 092a183 · 092a183
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diff --git a/docs/build/.buildinfo b/docs/build/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 4f79531dc52f23f438fcc8023850d20a
+config: 181252bb397a98d0e836b8bbf9c8cf8a
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/.doctrees/api_reference.doctree b/docs/build/.doctrees/api_reference.doctree
diff --git a/docs/build/.doctrees/contributing.doctree b/docs/build/.doctrees/contributing.doctree
diff --git a/docs/build/.doctrees/environment.pickle b/docs/build/.doctrees/environment.pickle
diff --git a/docs/build/.doctrees/history.doctree b/docs/build/.doctrees/history.doctree
diff --git a/docs/build/.doctrees/index.doctree b/docs/build/.doctrees/index.doctree
diff --git a/docs/build/.doctrees/readme.doctree b/docs/build/.doctrees/readme.doctree
diff --git a/docs/build/.doctrees/rnalysis.doctree b/docs/build/.doctrees/rnalysis.doctree
diff --git a/docs/build/.doctrees/rnalysis.fastq.kallisto_quantify_paired_end.doctree b/docs/build/.doctrees/rnalysis.fastq.kallisto_quantify_paired_end.doctree
diff --git a/docs/build/.doctrees/rnalysis.fastq.kallisto_quantify_single_end.doctree b/docs/build/.doctrees/rnalysis.fastq.kallisto_quantify_single_end.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.find_paralogs_ensembl.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.find_paralogs_ensembl.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.find_paralogs_panther.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.find_paralogs_panther.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.map_orthologs_ensembl.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.map_orthologs_ensembl.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.map_orthologs_orthoinspector.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.map_orthologs_orthoinspector.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.map_orthologs_panther.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.map_orthologs_panther.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.map_orthologs_phylomedb.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.map_orthologs_phylomedb.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.pca.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.pca.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.sort.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.sort.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.sort_by_principal_component.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.sort_by_principal_component.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.CountFilter.split_by_principal_components.doctree b/docs/build/.doctrees/rnalysis.filtering.CountFilter.split_by_principal_components.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.doctree b/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.find_paralogs_ensembl.doctree b/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.find_paralogs_ensembl.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.find_paralogs_panther.doctree b/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.find_paralogs_panther.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.map_orthologs_ensembl.doctree b/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.map_orthologs_ensembl.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.map_orthologs_orthoinspector.doctree b/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.map_orthologs_orthoinspector.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.map_orthologs_panther.doctree b/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.map_orthologs_panther.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.map_orthologs_phylomedb.doctree b/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.map_orthologs_phylomedb.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.sort.doctree b/docs/build/.doctrees/rnalysis.filtering.DESeqFilter.sort.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.Filter.doctree b/docs/build/.doctrees/rnalysis.filtering.Filter.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.Filter.find_paralogs_ensembl.doctree b/docs/build/.doctrees/rnalysis.filtering.Filter.find_paralogs_ensembl.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.Filter.find_paralogs_panther.doctree b/docs/build/.doctrees/rnalysis.filtering.Filter.find_paralogs_panther.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.Filter.map_orthologs_ensembl.doctree b/docs/build/.doctrees/rnalysis.filtering.Filter.map_orthologs_ensembl.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.Filter.map_orthologs_orthoinspector.doctree b/docs/build/.doctrees/rnalysis.filtering.Filter.map_orthologs_orthoinspector.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.Filter.map_orthologs_panther.doctree b/docs/build/.doctrees/rnalysis.filtering.Filter.map_orthologs_panther.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.Filter.map_orthologs_phylomedb.doctree b/docs/build/.doctrees/rnalysis.filtering.Filter.map_orthologs_phylomedb.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.Filter.sort.doctree b/docs/build/.doctrees/rnalysis.filtering.Filter.sort.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.doctree b/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.find_paralogs_ensembl.doctree b/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.find_paralogs_ensembl.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.find_paralogs_panther.doctree b/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.find_paralogs_panther.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.map_orthologs_ensembl.doctree b/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.map_orthologs_ensembl.doctree
diff --git a/.../build/.doctrees/rnalysis.filtering.FoldChangeFilter.map_orthologs_orthoinspector.doctree b/.../build/.doctrees/rnalysis.filtering.FoldChangeFilter.map_orthologs_orthoinspector.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.map_orthologs_panther.doctree b/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.map_orthologs_panther.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.map_orthologs_phylomedb.doctree b/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.map_orthologs_phylomedb.doctree
diff --git a/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.sort.doctree b/docs/build/.doctrees/rnalysis.filtering.FoldChangeFilter.sort.doctree
diff --git a/docs/build/_sources/rnalysis.filtering.CountFilter.find_paralogs_ensembl.rst.txt b/docs/build/_sources/rnalysis.filtering.CountFilter.find_paralogs_ensembl.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.CountFilter.find\_paralogs\_ensembl
+======================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: CountFilter.find_paralogs_ensembl
diff --git a/docs/build/_sources/rnalysis.filtering.CountFilter.find_paralogs_panther.rst.txt b/docs/build/_sources/rnalysis.filtering.CountFilter.find_paralogs_panther.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.CountFilter.find\_paralogs\_panther
+======================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: CountFilter.find_paralogs_panther
diff --git a/docs/build/_sources/rnalysis.filtering.CountFilter.map_orthologs_ensembl.rst.txt b/docs/build/_sources/rnalysis.filtering.CountFilter.map_orthologs_ensembl.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.CountFilter.map\_orthologs\_ensembl
+======================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: CountFilter.map_orthologs_ensembl
diff --git a/...ld/_sources/rnalysis.filtering.CountFilter.map_orthologs_orthoinspector.rst.txt b/...ld/_sources/rnalysis.filtering.CountFilter.map_orthologs_orthoinspector.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.CountFilter.map\_orthologs\_orthoinspector
+=============================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: CountFilter.map_orthologs_orthoinspector
diff --git a/docs/build/_sources/rnalysis.filtering.CountFilter.map_orthologs_panther.rst.txt b/docs/build/_sources/rnalysis.filtering.CountFilter.map_orthologs_panther.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.CountFilter.map\_orthologs\_panther
+======================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: CountFilter.map_orthologs_panther
diff --git a/docs/build/_sources/rnalysis.filtering.CountFilter.map_orthologs_phylomedb.rst.txt b/docs/build/_sources/rnalysis.filtering.CountFilter.map_orthologs_phylomedb.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.CountFilter.map\_orthologs\_phylomedb
+========================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: CountFilter.map_orthologs_phylomedb
diff --git a/docs/build/_sources/rnalysis.filtering.CountFilter.rst.txt b/docs/build/_sources/rnalysis.filtering.CountFilter.rst.txt
@@ -1,4 +1,4 @@
-rnalysis.filtering.CountFilter
+rnalysis.filtering.CountFilter
 ==============================
 
 .. currentmodule:: rnalysis.filtering
@@ -39,6 +39,8 @@ rnalysis.filtering.CountFilter
     CountFilter.filter_missing_values
     CountFilter.filter_percentile
     CountFilter.filter_top_n
+    CountFilter.find_paralogs_ensembl
+    CountFilter.find_paralogs_panther
     CountFilter.fold_change
     CountFilter.from_dataframe
     CountFilter.from_folder
@@ -47,6 +49,10 @@ rnalysis.filtering.CountFilter
     CountFilter.intersection
     CountFilter.ma_plot
     CountFilter.majority_vote_intersection
+    CountFilter.map_orthologs_ensembl
+    CountFilter.map_orthologs_orthoinspector
+    CountFilter.map_orthologs_panther
+    CountFilter.map_orthologs_phylomedb
     CountFilter.normalize_median_of_ratios
     CountFilter.normalize_rle
     CountFilter.normalize_tmm
@@ -66,6 +72,7 @@ rnalysis.filtering.CountFilter
     CountFilter.save_table
     CountFilter.scatter_sample_vs_sample
     CountFilter.sort
+    CountFilter.sort_by_principal_component
     CountFilter.split_by_attribute
     CountFilter.split_by_percentile
     CountFilter.split_by_principal_components

diff --git a/...ild/_sources/rnalysis.filtering.CountFilter.sort_by_principal_component.rst.txt b/...ild/_sources/rnalysis.filtering.CountFilter.sort_by_principal_component.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.CountFilter.sort\_by\_principal\_component
+=============================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: CountFilter.sort_by_principal_component
diff --git a/docs/build/_sources/rnalysis.filtering.DESeqFilter.find_paralogs_ensembl.rst.txt b/docs/build/_sources/rnalysis.filtering.DESeqFilter.find_paralogs_ensembl.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.DESeqFilter.find\_paralogs\_ensembl
+======================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: DESeqFilter.find_paralogs_ensembl
diff --git a/docs/build/_sources/rnalysis.filtering.DESeqFilter.find_paralogs_panther.rst.txt b/docs/build/_sources/rnalysis.filtering.DESeqFilter.find_paralogs_panther.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.DESeqFilter.find\_paralogs\_panther
+======================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: DESeqFilter.find_paralogs_panther
diff --git a/docs/build/_sources/rnalysis.filtering.DESeqFilter.map_orthologs_ensembl.rst.txt b/docs/build/_sources/rnalysis.filtering.DESeqFilter.map_orthologs_ensembl.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.DESeqFilter.map\_orthologs\_ensembl
+======================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: DESeqFilter.map_orthologs_ensembl
diff --git a/...ld/_sources/rnalysis.filtering.DESeqFilter.map_orthologs_orthoinspector.rst.txt b/...ld/_sources/rnalysis.filtering.DESeqFilter.map_orthologs_orthoinspector.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.DESeqFilter.map\_orthologs\_orthoinspector
+=============================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: DESeqFilter.map_orthologs_orthoinspector
diff --git a/docs/build/_sources/rnalysis.filtering.DESeqFilter.map_orthologs_panther.rst.txt b/docs/build/_sources/rnalysis.filtering.DESeqFilter.map_orthologs_panther.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.DESeqFilter.map\_orthologs\_panther
+======================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: DESeqFilter.map_orthologs_panther
diff --git a/docs/build/_sources/rnalysis.filtering.DESeqFilter.map_orthologs_phylomedb.rst.txt b/docs/build/_sources/rnalysis.filtering.DESeqFilter.map_orthologs_phylomedb.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.DESeqFilter.map\_orthologs\_phylomedb
+========================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: DESeqFilter.map_orthologs_phylomedb
diff --git a/docs/build/_sources/rnalysis.filtering.DESeqFilter.rst.txt b/docs/build/_sources/rnalysis.filtering.DESeqFilter.rst.txt
@@ -1,4 +1,4 @@
-rnalysis.filtering.DESeqFilter
+rnalysis.filtering.DESeqFilter
 ==============================
 
 .. currentmodule:: rnalysis.filtering
@@ -34,10 +34,16 @@ rnalysis.filtering.DESeqFilter
     DESeqFilter.filter_percentile
     DESeqFilter.filter_significant
     DESeqFilter.filter_top_n
+    DESeqFilter.find_paralogs_ensembl
+    DESeqFilter.find_paralogs_panther
     DESeqFilter.from_dataframe
     DESeqFilter.head
     DESeqFilter.intersection
     DESeqFilter.majority_vote_intersection
+    DESeqFilter.map_orthologs_ensembl
+    DESeqFilter.map_orthologs_orthoinspector
+    DESeqFilter.map_orthologs_panther
+    DESeqFilter.map_orthologs_phylomedb
     DESeqFilter.number_filters
     DESeqFilter.print_features
     DESeqFilter.save_csv

diff --git a/docs/build/_sources/rnalysis.filtering.Filter.find_paralogs_ensembl.rst.txt b/docs/build/_sources/rnalysis.filtering.Filter.find_paralogs_ensembl.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.Filter.find\_paralogs\_ensembl
+=================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: Filter.find_paralogs_ensembl
diff --git a/docs/build/_sources/rnalysis.filtering.Filter.find_paralogs_panther.rst.txt b/docs/build/_sources/rnalysis.filtering.Filter.find_paralogs_panther.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.Filter.find\_paralogs\_panther
+=================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: Filter.find_paralogs_panther
diff --git a/docs/build/_sources/rnalysis.filtering.Filter.map_orthologs_ensembl.rst.txt b/docs/build/_sources/rnalysis.filtering.Filter.map_orthologs_ensembl.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.Filter.map\_orthologs\_ensembl
+=================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: Filter.map_orthologs_ensembl
diff --git a/docs/build/_sources/rnalysis.filtering.Filter.map_orthologs_orthoinspector.rst.txt b/docs/build/_sources/rnalysis.filtering.Filter.map_orthologs_orthoinspector.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.Filter.map\_orthologs\_orthoinspector
+========================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: Filter.map_orthologs_orthoinspector
diff --git a/docs/build/_sources/rnalysis.filtering.Filter.map_orthologs_panther.rst.txt b/docs/build/_sources/rnalysis.filtering.Filter.map_orthologs_panther.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.Filter.map\_orthologs\_panther
+=================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: Filter.map_orthologs_panther
diff --git a/docs/build/_sources/rnalysis.filtering.Filter.map_orthologs_phylomedb.rst.txt b/docs/build/_sources/rnalysis.filtering.Filter.map_orthologs_phylomedb.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.Filter.map\_orthologs\_phylomedb
+===================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: Filter.map_orthologs_phylomedb
diff --git a/docs/build/_sources/rnalysis.filtering.Filter.rst.txt b/docs/build/_sources/rnalysis.filtering.Filter.rst.txt
@@ -1,4 +1,4 @@
-rnalysis.filtering.Filter
+rnalysis.filtering.Filter
 =========================
 
 .. currentmodule:: rnalysis.filtering
@@ -31,10 +31,16 @@ rnalysis.filtering.Filter
     Filter.filter_missing_values
     Filter.filter_percentile
     Filter.filter_top_n
+    Filter.find_paralogs_ensembl
+    Filter.find_paralogs_panther
     Filter.from_dataframe
     Filter.head
     Filter.intersection
     Filter.majority_vote_intersection
+    Filter.map_orthologs_ensembl
+    Filter.map_orthologs_orthoinspector
+    Filter.map_orthologs_panther
+    Filter.map_orthologs_phylomedb
     Filter.number_filters
     Filter.print_features
     Filter.save_csv

diff --git a/...uild/_sources/rnalysis.filtering.FoldChangeFilter.find_paralogs_ensembl.rst.txt b/...uild/_sources/rnalysis.filtering.FoldChangeFilter.find_paralogs_ensembl.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.FoldChangeFilter.find\_paralogs\_ensembl
+===========================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: FoldChangeFilter.find_paralogs_ensembl
diff --git a/...uild/_sources/rnalysis.filtering.FoldChangeFilter.find_paralogs_panther.rst.txt b/...uild/_sources/rnalysis.filtering.FoldChangeFilter.find_paralogs_panther.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.FoldChangeFilter.find\_paralogs\_panther
+===========================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: FoldChangeFilter.find_paralogs_panther
diff --git a/...uild/_sources/rnalysis.filtering.FoldChangeFilter.map_orthologs_ensembl.rst.txt b/...uild/_sources/rnalysis.filtering.FoldChangeFilter.map_orthologs_ensembl.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.FoldChangeFilter.map\_orthologs\_ensembl
+===========================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: FoldChangeFilter.map_orthologs_ensembl
diff --git a/...ources/rnalysis.filtering.FoldChangeFilter.map_orthologs_orthoinspector.rst.txt b/...ources/rnalysis.filtering.FoldChangeFilter.map_orthologs_orthoinspector.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.FoldChangeFilter.map\_orthologs\_orthoinspector
+==================================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: FoldChangeFilter.map_orthologs_orthoinspector
diff --git a/...uild/_sources/rnalysis.filtering.FoldChangeFilter.map_orthologs_panther.rst.txt b/...uild/_sources/rnalysis.filtering.FoldChangeFilter.map_orthologs_panther.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.FoldChangeFilter.map\_orthologs\_panther
+===========================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: FoldChangeFilter.map_orthologs_panther
diff --git a/...ld/_sources/rnalysis.filtering.FoldChangeFilter.map_orthologs_phylomedb.rst.txt b/...ld/_sources/rnalysis.filtering.FoldChangeFilter.map_orthologs_phylomedb.rst.txt
@@ -0,0 +1,6 @@
+rnalysis.filtering.FoldChangeFilter.map\_orthologs\_phylomedb
+=============================================================
+
+.. currentmodule:: rnalysis.filtering
+
+.. automethod:: FoldChangeFilter.map_orthologs_phylomedb
diff --git a/docs/build/_sources/rnalysis.filtering.FoldChangeFilter.rst.txt b/docs/build/_sources/rnalysis.filtering.FoldChangeFilter.rst.txt
@@ -1,4 +1,4 @@
-rnalysis.filtering.FoldChangeFilter
+rnalysis.filtering.FoldChangeFilter
 ===================================
 
 .. currentmodule:: rnalysis.filtering
@@ -33,10 +33,16 @@ rnalysis.filtering.FoldChangeFilter
     FoldChangeFilter.filter_missing_values
     FoldChangeFilter.filter_percentile
     FoldChangeFilter.filter_top_n
+    FoldChangeFilter.find_paralogs_ensembl
+    FoldChangeFilter.find_paralogs_panther
     FoldChangeFilter.from_dataframe
     FoldChangeFilter.head
     FoldChangeFilter.intersection
     FoldChangeFilter.majority_vote_intersection
+    FoldChangeFilter.map_orthologs_ensembl
+    FoldChangeFilter.map_orthologs_orthoinspector
+    FoldChangeFilter.map_orthologs_panther
+    FoldChangeFilter.map_orthologs_phylomedb
     FoldChangeFilter.number_filters
     FoldChangeFilter.print_features
     FoldChangeFilter.randomization_test

diff --git a/docs/build/_static/documentation_options.js b/docs/build/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '3.9.2',
+    VERSION: '3.10.0',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',