OrthoInspector tests no longer uses ortholog_mapper fixture when not … #66
Workflow file for this run
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| name: Pyinstaller Release | |
| on: | |
| push: | |
| tags: | |
| - 'V*' # | |
| workflow_dispatch: | |
| env: | |
| HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: 1 | |
| jobs: | |
| createrelease: | |
| name: Create Release | |
| runs-on: [ ubuntu-latest ] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.VID_CHECKSUM_PAT }} | |
| - name: Install dev requirements | |
| run: python -m pip install --upgrade -r requirements_dev.txt | |
| - name: Calculate checksums | |
| run: python packaging/checksum_videos.py | |
| - uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| # Commit message for the created commit. | |
| commit_message: Calculate quick-start video checksums | |
| file_pattern: 'rnalysis/gui/videos/checksums/*.txt' | |
| branch: master | |
| - name: Get latest changelog | |
| run: python packaging/parse_changelog.py | |
| - name: Create Release | |
| id: create_release | |
| uses: actions/create-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| tag_name: ${{ github.ref }} | |
| release_name: Stable release ${{ github.ref_name }} | |
| body_path: latest_changelog.md | |
| draft: false | |
| prerelease: false | |
| - name: Output Release URL File | |
| run: echo "${{ steps.create_release.outputs.upload_url }}" > release_url.txt | |
| - name: Save Release URL File for publish | |
| uses: actions/upload-artifact@v1 | |
| with: | |
| name: release_url | |
| path: release_url.txt | |
| build: | |
| name: Build packages | |
| needs: createrelease | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: macos-11 | |
| TARGET: macos | |
| CMD_BUILD: > | |
| pyinstaller RNAlysis.spec && | |
| cd dist/ && | |
| zip -r RNAlysis-3.10.0_macos.zip ./RNAlysis* && | |
| ls -ltr | |
| OUT_FILE_NAME: RNAlysis-3.10.0_macos.zip | |
| ASSET_MIME: application/zip | |
| - os: windows-latest | |
| TARGET: windows | |
| CMD_BUILD: > | |
| pyinstaller RNAlysis.spec && | |
| cd dist/ && | |
| 7z a RNAlysis-3.10.0_windows.zip -r "RNAlysis-3.10.0/" | |
| OUT_FILE_NAME: RNAlysis-3.10.0_windows.zip | |
| ASSET_MIME: application/zip | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: brew update (macOS) | |
| if: runner.os == 'MacOS' | |
| run: brew update | |
| - name: Setup Graphviz | |
| uses: ts-graphviz/setup-graphviz@v1 | |
| - name: Cache LLVM and Clang | |
| id: cache-llvm | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ runner.temp }}/llvm | |
| key: llvm-9 | |
| - name: Install LLVM and Clang | |
| if: runner.os != 'macOS' | |
| uses: KyleMayes/install-llvm-action@v1 | |
| with: | |
| version: "9.0" | |
| directory: ${{ runner.temp }}/llvm | |
| cached: ${{ steps.cache-llvm.outputs.cache-hit }} | |
| - name: command line tools on MacOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| gcc -v -xc++ /dev/null -fsyntax-only | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.11 | |
| cache: 'pip' | |
| - name: Install dev requirements | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade -r requirements_dev.txt | |
| - name: Install dependencies | |
| run: python -m pip install .[all] | |
| - name: Build with pyinstaller for ${{matrix.TARGET}} | |
| run: ${{matrix.CMD_BUILD}} | |
| - name: Load Release URL File from release job | |
| uses: actions/download-artifact@v1 | |
| with: | |
| name: release_url | |
| - name: Get Release File Name & Upload URL | |
| id: get_release_info | |
| shell: bash | |
| run: | | |
| value=`cat release_url/release_url.txt` | |
| echo ::set-output name=upload_url::$value | |
| - name: Upload Release Asset | |
| id: upload-release-asset | |
| uses: softprops/action-gh-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| files: ./dist/${{ matrix.OUT_FILE_NAME}} |