Removed unused files and updated documentation for mkdocs (dockerfile…

… included)

caimira/docs/Dockerfile

@@ -0,0 +1,41 @@
+# Use the conda image to install Python
+FROM registry.cern.ch/docker.io/condaforge/mambaforge AS conda
+
+ARG PYTHON_VERSION=3.12
+RUN mamba create --yes -p /opt/app python=${PYTHON_VERSION}
+
+# Install system dependencies, including Graphviz
+RUN conda install conda-forge::graphviz
+
+# Copy project files to the container
+COPY . /app
+WORKDIR /app
+
+# Install caimira
+RUN pip install .
+
+# Docs directory
+WORKDIR /app/docs
+
+# Install docs dependencies
+RUN pip install -r requirements.txt
+
+# Sphinx directory
+WORKDIR /app/docs/sphinx
+
+# Generate markdown project's documentation
+RUN sphinx-build -b markdown . _build/markdown
+
+# Base docs directory
+WORKDIR /app/docs
+
+# Run the Python script to update markdown files, move it, and generate UML diagram
+RUN python3 style_docs.py \
+&& mv sphinx/_build/markdown/index.md mkdocs/docs/code_documentation/models.md \
+&& pyreverse -o png -p UML-CAiMIRA --output-directory mkdocs/docs ../src/caimira/calculator/models/models.py
+
+# Mkdocs directory
+WORKDIR /app/docs/mkdocs
+
+# Command to serve the MkDocs site
+CMD ["python", "-m", "mkdocs", "serve", "--dev-addr=0.0.0.0:8080"]

caimira/docs/mkdocs/docs/code_documentation/index.md

@@ -0,0 +1,3 @@
+# Code Documentation
+
+* [CAiMIRA models](models.md)

docs/docs/full_diameter_dependence.md → caimira/docs/mkdocs/docs/full_diameter_dependence.md

@@ -310,9 +310,11 @@ Since the CO<sub>2</sub> concentration differs from the virus concentration, the
 
 ## CAiMIRA UML Diagram
 
-The following diagram describes all the data classes and their relations under the `models.py` file. Click the diagram to zoom-in.
+The following diagram describes all the data classes and their relations under the models.py file. Click the diagram to zoom-in.
 
-[![CAiMIRA UML Diagram](UML-CAiMIRA.png)](UML-CAiMIRA.png)
+[![CAiMIRA UML diagram](classes_UML-CAiMIRA.png)](UML-CAiMIRA.png)
+
+CAiMIRA `models.py` file UML diagram.
 
 ## REFERENCES