handled expected number of new cases calculation (including tests) #861

	# This module is part of CAiMIRA. Please see the repository at
	# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
	name: CI

	on:
	push:
	branches:
	- master
	- 'feature/*'
	pull_request:
	branches:
	- master
	- 'feature/*'
	workflow_dispatch:
	inputs:
	reason:
	description: 'Reason'
	required: false
	default: 'Manual trigger'

	jobs:
	test-install:
	runs-on: ubuntu-latest
	env:
	PROJECT_ROOT: ./
	PROJECT_NAME: caimira
	steps:
	- name: Checkout
	uses: actions/checkout@v2

	- name: Set up Python 3.9
	uses: actions/setup-python@v2
	with:
	python-version: 3.9

	- name: Install dependencies
	run: \|
	python -m pip install ${PROJECT_ROOT}[test]

	- name: Run tests
	run: \|
	mkdir -p ~/not-the-source-dir && cd ~/not-the-source-dir
	python -m pytest --pyargs ${PROJECT_NAME}
	test-dev:
	runs-on: ubuntu-20.04
	env:
	PROJECT_ROOT: ./
	PROJECT_NAME: caimira
	CAIMIRA_TESTS_CALCULATOR_TIMEOUT: 30
	steps:
	- name: Checkout
	uses: actions/checkout@v2

	- name: Set up Python 3.9
	uses: actions/setup-python@v2
	with:
	python-version: 3.9

	- name: Install dependencies
	run: \|
	python -m pip install -e ${PROJECT_ROOT}[test]
	python -m pip install pytest-cov

	- name: Run tests
	run: \|
	cd ${PROJECT_ROOT}
	python -m pytest ./${PROJECT_NAME} --cov=${PROJECT_NAME} --junitxml=report.xml

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