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33 Open 126 Closed
33 Open 126 Closed
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Issues list

Problem running Dockerized protect / where to find SSE-C key for downloading reference data?
#294 opened Jun 17, 2021 by anttikos
4
Error when using Dockerized PHLAT
#293 opened May 18, 2021 by rbowenj
numerically sort positions in vcfs
#290 opened May 26, 2018 by arkal
2
Allow user to specify majority
#286 opened May 16, 2018 by arkal
@davidstew
Make saving logs (if possible) a univ_option
#275 opened May 1, 2018 by arkal
Allow choice of pMHC predictors
#269 opened Apr 18, 2018 by davidstew
Allow mix and match of mutation callers in progress
#265 opened Mar 19, 2018 by arkal
1
@davidstew
Make section in manual on contributions
#264 opened Mar 2, 2018 by arkal
@arkal
Ensure resource requirements are provided for EACH job
#255 opened Jan 31, 2018 by arkal
Better help with Protect --help
#253 opened Jan 31, 2018 by arkal
Consider MHCFlurry
#249 opened Jan 26, 2018 by arkal
Citable reference
#248 opened Jan 21, 2018 by schelhorn
2
Consider DeepMHC
#247 opened Jan 8, 2018 by arkal
Diagnose "Removal In Progress
#245 opened Jan 7, 2018 by arkal
left align indels
#239 opened Nov 7, 2017 by arkal
1
Upgrade to mhci:2.17
#238 opened Oct 26, 2017 by arkal
Disregard mitochondrial and rna-gene fusions in progress
#237 opened Oct 16, 2017 by arkal
1
@arkal
Fix Makefiles to not crash on release jenkins runs
#222 opened Jul 12, 2017 by arkal
Add note to README about non-deterministic filter-radia failures
#217 opened Jun 26, 2017 by arkal
Don't fail if transgene finds 0 actionable mutations in progress
#214 opened Jun 24, 2017 by arkal
@davidstew
Modify dockerfile to safe-remove toil.git always
#206 opened Jun 15, 2017 by arkal
Add fusions to start-from-vcf support
#192 opened Jun 1, 2017 by arkal
encrypt aws jobstore
#151 opened Feb 8, 2017 by arkal
Docker output is a single tar file - should be one tar per subdirectory
#150 opened Feb 8, 2017 by cket
@cket
Add Prada guess-ft
#94 opened Aug 3, 2016 by jpfeil
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