CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

Installation

Compiled releases for Linux, OS X, and Windows are available from cellprofiler.org/releases.

Install from the Python Package Index (PyPI)

$ pip install --pre cellprofiler

Install from Source

Prerequisites

NumPy is the fundamental package for scientific computing with Python:

$ pip install numpy

Installation

$ pip install --editable .