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Include references from PhosphoSite in the enzyme-substrate database #115

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deeenes opened this issue Sep 25, 2019 · 0 comments
Open

Include references from PhosphoSite in the enzyme-substrate database #115

deeenes opened this issue Sep 25, 2019 · 0 comments
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enhancement Adds a new feature/information fix Solved a bug, error or typo

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@deeenes
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deeenes commented Sep 25, 2019

We process PhosphoSite from two sources: the tabular and the BioPax. The former does not contain references, the latter we don't extract the PTMs from. We should use only the BioPax, for this we need to process also the PTMs from there together with references. See the dataio.get_phosphosite_new method (it's half ready).
@deeenes deeenes added enhancement Adds a new feature/information fix Solved a bug, error or typo labels Sep 25, 2019
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