DESCRIPTION

Package: liana
Type: Package
Title: LIANA: a LIgand-receptor ANalysis frAmework
Version: 0.1.14
Authors@R: c(
    person(
        given = "Daniel",
        family = "Dimitrov",
        role = c("cre", "aut"),
        email = "daniel.dimitrov@uni-heidelberg.de",
        comment = c(ORCID = "0000-0002-5197-2112")
    ),
    person(
        given = "Charlotte",
        family = "Boys",
        role = c("aut"),
        email = "mm228@stud.uni-heidelberg.de",
        comment = c(ORCID = "0000-0003-3955-5110")
    ),
    person(
        given = "Martin",
        family = "Garrido Rodriguez",
        role = c("aut"),
        email = "martin.garrido@uni-heidelberg.de",
        comment = c(ORCID = "0000-0003-4125-5643")
    ),
    person(
        given = "Denes",
        family = "Turei",
        role = c("aut"),
        email = "turei.denes@gmail.com",
        comment = c(ORCID = "0000-0002-7249-9379")
    ),
    person(
        given = "James",
        family = "Nagai",
        role = c("aut"),
        email = "jshinitinaga@ukaachen.de",
        comment = c(ORCID = "0000-0002-7655-7206")
    ))
Description: LIANA provides a number of methods and resources for ligand-receptor interaction inference from scRNA-seq data.
License: GPL-3 + file LICENSE
URL: https://saezlab.github.io/liana/
BugReports: https://github.com/saezlab/liana/issues
Encoding: UTF-8
VignetteBuilder: knitr
Depends:
    R(>= 4.0)
Imports:
    utils,
    reticulate,
    stringr,
    magrittr,
    purrr,
    tidyr,
    tibble,
    dplyr,
    readr,
    rlang,
    OmnipathR,
    SingleCellExperiment,
    scran,
    scater,
    scuttle,
    SeuratObject,
    tidyselect,
    ggplot2,
    ComplexHeatmap,
    RColorBrewer,
    basilisk.utils,
    basilisk,
    methods
Suggests:
    CellChat,
    knitr,
    BiocStyle,
    rmarkdown,
    markdown,
    testthat (>= 3.0.0),
    sessioninfo,
    Seurat,
    entropy,
    circlize,
    furrr (>= 0.2.0),
    future,
    tidyverse,
    devtools,
    decoupleR,
    ExperimentHub,
    muscData,
    broom
biocViews: scater, scran, SingleCellExperiment, ComplexHeatmap, muscData, ExperimentHub
Remotes: sqjin/CellChat, saezlab/OmnipathR, saezlab/decoupleR, LTLA/basilisk.utils, LTLA/basilisk
RoxygenNote: 7.2.3
Config/testthat/edition: 3