_pkgdown.yml

url: https://saezlab.github.io/decoupleR/

destination: docs

template:
  bootstrap: 5
  bootswatch: cosmo
  bslib:
    primary: "#A6A6A6"
  params:
    ganalytics: UA-119440867-11
    highlightcss: false

development:
  mode: auto

navbar:
  structure:
    left: [home, intro, reference, articles, tutorials, news]
    right: [github, twitter, homepage]
  components:
     twitter:
       icon: "fab fa-twitter fa-lg"
       href: https://twitter.com/saezlab
     homepage:
       icon: "fas fa-university"
       href: https://www.saezlab.org
     type: dark
     bg: primary

reference:
  - title: decoupleR
    desc: >
    contents:
      - decouple
  - title: Statistics
    desc: >
    contents:
      - starts_with("run_")
  - title: Network converters
    desc: >
    contents:
      - convert_f_defaults
      - rename_net
      - extract_sets
  - title: Utils
    desc: >
    contents:
      - check_corr
      - get_toy_data
      - show_methods
      - .fit_preprocessing
      - filt_minsize
      - intersect_regulons
  - title: Omnipath wrappers
    desc: >
    contents:
      - show_resources
      - get_resource
      - get_dorothea
      - get_collectri
      - get_progeny
      - get_ksn_omnipath