cut_biedge_strgraph_core Undefined references

[zhizhi411]

Hi,I just tried to download and compile smartdenovo using your command lines:
git clone https://github.com/ruanjue/smartdenovo.git
cd smartdenovo
make
but,
the compilation endend on:

gcc -W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -mpopcnt -mssse3 -o wtext file_reader.c ksw.c wtext.c -lm -lpthread
gcc -W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -mpopcnt -mssse3 -o wtgbo file_reader.c ksw.c wtgbo.c -lm -lpthread
gcc -W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -mpopcnt -mssse3 -o wtlay file_reader.c wtlay.c -lm -lpthread
/tmp/ccXfrjCm.o：在函数‘merge_bubbles_strgraph’中：
wtlay.c:(.text+0x9e43)：对‘cut_biedge_strgraph_core’未定义的引用
wtlay.c:(.text+0x9e5d)：对‘cut_biedge_strgraph_core’未定义的引用
wtlay.c:(.text+0x9e9e)：对‘cut_biedge_strgraph_core’未定义的引用
wtlay.c:(.text+0x9eb8)：对‘cut_biedge_strgraph_core’未定义的引用
collect2: 错误：ld 返回 1
make: *** [Makefile:48：wtlay] 错误 1

Please help me!

more other information:

gcc -v
使用内建 specs。
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
目标：x86_64-redhat-linux
配置为：../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.rockylinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
线程模型：posix
gcc 版本 8.5.0 20210514 (Red Hat 8.5.0-10) (GCC)

cpp -v
使用内建 specs。
COLLECT_GCC=cpp
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
目标：x86_64-redhat-linux
配置为：../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.rockylinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
线程模型：posix
gcc 版本 8.5.0 20210514 (Red Hat 8.5.0-10) (GCC)
COLLECT_GCC_OPTIONS='-E' '-v' '-mtune=generic' '-march=x86-64'
/usr/libexec/gcc/x86_64-redhat-linux/8/cc1 -E -quiet -v - -mtune=generic -march=x86-64
忽略不存在的目录“/usr/lib/gcc/x86_64-redhat-linux/8/include-fixed”
忽略不存在的目录“/usr/lib/gcc/x86_64-redhat-linux/8/../../../../x86_64-redhat-linux/include”
#include "..." 搜索从这里开始：
#include <...> 搜索从这里开始：
/usr/lib/gcc/x86_64-redhat-linux/8/include
/usr/local/include
/usr/include
搜索列表结束

[zhizhi411]

I solved it！So happy！please see “smartdenovo make error #18”。and #18 (comment)
Changes in the Makefile as mentioned here
Removing lines 95 to 97 and 832 to 834 in wtlay.h as mentioned here
Add static before all five occurrences of inline (lines 491 to 518) in wtlay.h