Died at ./smartdenovo-master/smartdenovo.pl line 23.

[baizixiansheng]

Hi,
I had downloaded smartdenovo，and running the command：

-bash-4.1$ ./smartdenovo-master/smartdenovo.pl -c 1 ~/scsio/Nanopore/Data/N_all_filt.fq > wtasm.mak
but the error coming:
Died at ./smartdenovo-master/smartdenovo.pl line 23.
I don't know how to deal with it. Could you tell me how to do about it?
Thank you.

[ruanjue]

Put programs under the same directory with smartdenovo.pl.

[baizixiansheng]

Thank you very much for your answer. But I've just tried a few minutes ago, and it still make mistakes:
Died at ./smartdenovo-master/smartdenovo.pl line 23.
My command is：
./smartdenovo.pl -p prefix -c 1 N_all_filt.fq > prefix.mak
And the line 23 of smartdenovo.pl is:
$opts{pre} = gwhich("wtpre") || die;

[ruanjue]

Have you compile smartdenovo?

[baizixiansheng]

Sorry, I realized that when I compile it, there was a mistake:
wtzmo.c:1738: error: ‘FileReader’ has no member named ‘tabs’
wtzmo.c:1738: error: ‘FileReader’ has no member named ‘tabs’
wtzmo.c:1738: error: ‘FileReader’ has no member named ‘tabs’
wtzmo.c:1766: error: ‘FileReader’ has no member named ‘tabs’
wtzmo.c:1767: error: ‘FileReader’ has no member named ‘tabs’
make: *** [wtzmo] Error 1
And I running the command again:
./smartdenovo.pl -p prefix -c 1 N_all_filt.fq > prefix.mak
The error became:
$opts{zmo} = gwhich("wtzmo") || die;

[ruanjue]

#17

[baizixiansheng]

Oh, I get it! Thank you with all my heart!