adhd_pipeline_roi_washu_3000.m

% Copyright (c) Pierre Bellec, Montreal Neurological Institute, 2008-2010.
%               Centre de recherche de l'institut de Gériatrie de Montréal
%               Département d'informatique et de recherche opérationnelle
%               Université de Montréal, 2011.
% Maintainer : pierre.bellec@criugm.qc.ca
% See licensing information in the code.
% Keywords : fMRI, resting-state, ADHD, region growing

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% furnished to do so, subject to the following conditions:
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clear

%% Setting input/output files 
path_data = '/media/database2/adhd_niak/washu_output/';
opt_g.min_xcorr_func = -Inf;
opt_g.max_translation = Inf;
opt_g.max_rotation = Inf;
files_in = niak_grab_fmri_preprocess(path_data,opt_g);

%% Options
files_in.atoms = '/media/database2/adhd_niak/rois_3000_kki/rois/brain_rois.mnc.gz'; 
path_results   = '/media/database2/adhd_niak/rois_training_3000/rois_3000_washu/';
opt.folder_out = path_results; % Where to store the results
opt.flag_roi   = true; % Only generate the ROI parcelation

%% Run the pipeline
opt.flag_test = true;
opt.psom.max_queued = 8;
[pipeline,opt] = niak_pipeline_stability_rest(files_in,opt);