Repositories list

• ome-model

  Public
  OME model (specification, code generator, implementation)

  imageschemadata-model+ 3specificationcode-generationome-model

  XSLT

  •

  Other

  •26•14•15•1•Updated Nov 25, 2024Nov 25, 2024

• omero-marshal

  Public
  OMERO marshalling infrastructure

  modelmarshallingpip+ 1omero

  Python

  •

  GNU General Public License v2.0

  •11•3•4•3•Updated Nov 25, 2024Nov 25, 2024

• ome2024-ngff-challenge

  Public
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

  ome-ngffome-zarr-converter

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •14•15•7•4•Updated Nov 25, 2024Nov 25, 2024

• omero-python-superbuild

  Public
  OMERO build for Python server components

  pythonbuildomero+ 1meta-repo

  4•0•1•2•Updated Nov 25, 2024Nov 25, 2024

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•0•0•Updated Nov 25, 2024Nov 25, 2024

• cookiecutter-omero-cli-plugin

  Public
  Cookiecutter for OMERO.cli plugins

  Python

  •3•2•1•0•Updated Nov 24, 2024Nov 24, 2024

• omero-fpbioimage

  Public
  FPBioImage as an OMERO.web app

  Python

  •3•2•4•1•Updated Nov 24, 2024Nov 24, 2024

• omero-openwith-url

  Public
  An OMERO.web plugin for opening images via configured URLs

  Python

  •2•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• omero-web

  Public
  Django-based OMERO.web client

  pythonclientdjango+ 2webomero

  Python

  •31•17•127•10•Updated Nov 22, 2024Nov 22, 2024

• omero-certificates

  Public
  OMERO server certificate management plugin

  pluginclideployment+ 3servercertificatesomero

  Python

  •

  GNU General Public License v2.0

  •7•0•2•1•Updated Nov 22, 2024Nov 22, 2024

• omero-build

  Public
  OMERO top-level build for all components

  buildomerometa-repo

  Dockerfile

  •7•1•3•0•Updated Nov 22, 2024Nov 22, 2024

• omero-cli-zarr

  Public
  omerozarrngff+ 1ome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •10•16•17•4•Updated Nov 22, 2024Nov 22, 2024

• omero-upload

  Public
  OMERO Python library for uploading files

  pythonplugincli+ 2uploadomero

  Python

  •

  GNU General Public License v2.0

  •4•1•0•0•Updated Nov 22, 2024Nov 22, 2024

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 1omero

  Python

  •

  GNU General Public License v2.0

  •32•22•74•16•Updated Nov 22, 2024Nov 22, 2024

• omero-webtest

  Public
  An OMERO.web app for prototypes and examples

  webappomero

  HTML

  •

  GNU Affero General Public License v3.0

  •12•3•1•0•Updated Nov 22, 2024Nov 22, 2024

• omero-cli-duplicate

  Public
  OMERO command-line tool for duplicating database objects

  pythonplugincli+ 2commandomero

  Python

  •

  GNU General Public License v2.0

  •8•2•4•1•Updated Nov 22, 2024Nov 22, 2024

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1ome-zarr

  Python

  •

  Other

  •54•158•59•13•Updated Nov 22, 2024Nov 22, 2024

• omero-weberror

  Public
  An OMERO.web app for generating Web errors

  webappomero

  Python

  •

  GNU Affero General Public License v3.0

  •9•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• omero-plugins

  Public
  Collection of OMERO extensions (plugins, apps)

  ecosystembuildplugins+ 2omerometa-repo

  7•0•1•5•Updated Nov 22, 2024Nov 22, 2024

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •51•22•27•5•Updated Nov 22, 2024Nov 22, 2024

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2bioimagingfile-formats

  Bikeshed

  •

  Other

  •41•118•91•17•Updated Nov 22, 2024Nov 22, 2024

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •22•5•10•2•Updated Nov 22, 2024Nov 22, 2024

• meeting-minutes

  Public
  Minutes from the weekly OME community meetings

  Creative Commons Attribution 4.0 International

  •6•0•1•0•Updated Nov 21, 2024Nov 21, 2024

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  napari-pluginzarrngff+ 1python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •21•30•22•6•Updated Nov 21, 2024Nov 21, 2024

• omero-parade

  Public
  OMERO.web plugin for displaying Dataset thumbnails or Plates in webclient center panel

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •12•1•34•3•Updated Nov 21, 2024Nov 21, 2024

• omero-cli-server

  Public
  CLI plugin for managing an OMERO.server

  Python

  •

  GNU General Public License v2.0

  •3•1•0•4•Updated Nov 21, 2024Nov 21, 2024

• omero-mapr

  Public
  An OMERO.web app allowing to browse the data through attributes linked to the image

  pluginimageviewer+ 1omero

  Python

  •

  GNU Affero General Public License v3.0

  •13•5•17•3•Updated Nov 21, 2024Nov 21, 2024

• omero-cli-render

  Public
  OMERO command-line tool for rendering

  pythonplugincli+ 2commandomero

  Python

  •

  GNU General Public License v2.0

  •10•2•6•6•Updated Nov 21, 2024Nov 21, 2024

• omero-dropbox

  Public
  OMERO.dropbox server for watching directories

  pythoncomponentlib+ 2omeroomero-import

  Python

  •

  GNU General Public License v2.0

  •6•1•2•1•Updated Nov 21, 2024Nov 21, 2024

• omero-gallery

  Public
  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •15•5•20•1•Updated Nov 21, 2024Nov 21, 2024