Repositories list

• lab_data_management

  Public
  Lab data management

  HTML

  •

  MIT License

  •0•1•15•5•Updated Nov 23, 2024Nov 23, 2024

• nexus-se-docs

  Public
  The central docs repository for all things related to software engineering and internal SE tools

  Shell

  •

  MIT License

  •0•1•0•0•Updated Nov 15, 2024Nov 15, 2024

• snakemake-report-plugin-custom

  Public
  A custom report plugin for snakemake workflows

  Python

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• nexus-app-stack-contrib

  Public
  Python

  •

  Apache License 2.0

  •0•1•1•1•Updated Nov 12, 2024Nov 12, 2024

• scAmpi_single_cell_RNA

  Public
  Code related to scRNA analysis using the scAmpi workflow

  R

  •

  GNU General Public License v3.0

  •8•24•1•2•Updated Nov 7, 2024Nov 7, 2024

• gExcite_pipeline

  Public
  single-cell Gene and AnTibody Expression pipeline

  R

  •

  GNU General Public License v3.0

  •1•2•0•1•Updated Oct 29, 2024Oct 29, 2024

• basic_snakemake_workflow

  Public
  A self contained snakemake workflow to test new features

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• dcc

  Public
  docker compose wrapper

  Python

  •

  MIT License

  •0•1•1•0•Updated Oct 21, 2024Oct 21, 2024

• docker-exchange

  Public
  This is a docker image exchange repo

  0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• renku-test-project

  Public
  0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• smnrp

  Public
  Secure Multifunctional Nginx Reverse Proxy

  HTML

  •1•2•2•0•Updated Sep 12, 2024Sep 12, 2024

• nexus-data-management-tools

  Public
  Contains tools used for dataman

  Python

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• aebc2_website

  Public
  Source code for AEBC2 website on www.aebc2.eu

  Ruby

  •0•0•0•0•Updated Aug 19, 2024Aug 19, 2024

• civicutils

  Public
  Python package for querying, matching and downstream processing of CIViC information

  Python

  •

  GNU General Public License v3.0

  •0•1•1•1•Updated Aug 15, 2024Aug 15, 2024

• labkey_docker

  Public
  home of docker container source files for use with LabKey

  Shell

  •

  Apache License 2.0

  •4•0•0•0•Updated Jul 11, 2024Jul 11, 2024

• tu-pro_website

  Public
  Source code for the Tumor Profiler public website

  HTML

  •

  MIT License

  •16k•1•5•0•Updated Jul 10, 2024Jul 10, 2024

• acint

  Public
  Python

  •0•1•0•0•Updated Jun 4, 2024Jun 4, 2024

• quarto_example

  Public
  Mini Snakemake pipeline rendering a quarto report

  Python

  •0•1•0•0•Updated Apr 30, 2024Apr 30, 2024

• 2024_se_loop_bmip-architecture

  Public
  Contains Architectural Documents

  0•1•0•0•Updated Mar 6, 2024Mar 6, 2024

• ena_upload_ms

  Public
  Python

  •

  MIT License

  •0•2•0•1•Updated Feb 27, 2024Feb 27, 2024

• openssltools

  Public
  Tools to handle certificates using openssl

  Shell

  •0•1•0•0•Updated Jan 15, 2024Jan 15, 2024

• single-cell_omentum_analysis

  Public
  R

  •0•0•0•0•Updated Dec 21, 2023Dec 21, 2023

• Workshop_RDMS_BSSE_retreat

  Public
  Dockerfile

  •0•0•0•0•Updated Nov 29, 2023Nov 29, 2023

• scROSHI

  Public
  R

  •

  Other

  •3•1•3•1•Updated Oct 11, 2023Oct 11, 2023

• vep_offline

  Public
  Python

  •0•0•0•0•Updated Apr 27, 2023Apr 27, 2023

• ot2-workshop

  Public
  Workshop on how to program opentrons with pytnon

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Mar 29, 2023Mar 29, 2023

• opentron

  Public
  Code and Protocols for OT-2

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Mar 23, 2023Mar 23, 2023

• python-web-search-parser

  Public archive
  Python

  •0•0•0•0•Updated Jan 4, 2023Jan 4, 2023

• lego_sequencer

  Public archive
  A LEGO-based sequencer

  Python

  •0•1•0•26•Updated Dec 11, 2022Dec 11, 2022

• ssh-proxy

  Public
  A simple ssh proxy that listens on port 2222 and can be used to proxy ssh requests.

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Nov 24, 2022Nov 24, 2022