neurolibre

[pbellec]

Title

NeuroLibre reproducible preprints

Short description and the goals for the OHBM BrainHack

The NeuroLibre team led by Agâh Karakuzu just released the beta version of NeuroLibre.

This next-generation publication platform offers complete testing of preprints, including recreation of the computational and data environment, and reproduction of all figures, as part of the preprint publication process. All reproducibility assets are archived alongside a re-executable web version of the preprint upon acceptance.

Neurolibre is based on github and the popular Jupyter book project, based on traditional or Myst notebooks.

The objective of this project is to assist people get started creating their first reproducible preprint. We hope that this brainhack can ignite the first wave of publication of truly reproducible science.

Link to the Project

https://neurolibre.org

Image for the OHBM brainhack website

https://raw.githubusercontent.com/neurolibre/brand/main/png/card_tb.png

Project lead

Pierre Bellec @pbellec (both on github and on Discord)

Main Hub

Montreal

Other Hub covered by the leaders

• Montreal
• Asia / Pacific
• Europe / Middle East / Africa
• Americas

Skills

The ideal profile to start a NeuroLibre preprint is to have a work in preparation (or already published) which is supported by a collection of Jupyter Notebooks, and based on open data (at least partially).

You can learn all the rest as you go using our complete documentation: https://docs.neurolibre.org/en/latest/ and the support of our team during the hackathon.

Recommended tutorials for new contributors

• Set up a brainhack friendly computing environment
• A introduction to Bash
• Python: Writing a script
• Python: Data analysis with Python
• Python: Visualisation
• Machine learning basics
• BIDS
• Machine learning for neuroimaging
• VCS: Using Git and Github
• VCS: Data management with Datalad
• Virtualization
• High Performance Computing: Oracle cloud resource

Good first issues

No response

Twitter summary

The https://neurolibre.org/ reproducible preprint service is now open for beta! Published preprints are re-executable and include all the artefacts needed for reproduction (and it's been tested). Come work on your first NeuroLibre submission during BrainHack!

Short name for the Discord chat channel (~15 chars)

neurolibre

Please read and follow the OHBM Code of Conduct

• I agree to follow the OHBM Code of Conduct during the hackathon

[anibalsolon]

hey @pbellec can you provide the content and/or figure for this project to be added to Brainhack Proceeding 2023 by 15th May? Also, please remember to fill out your team member's details using this form: https://forms.gle/Ku3AVHcXvpUqVVkV7 . Cheers