fMRIPrep-integrate AFNI left and right flip detection tool into fMRIPrep

[esavary]

Title

fMRIPrep-integrate AFNI left and right flip detection tool into fMRIPrep

Short description and the goals for the OHBM BrainHack

In this hackathon project, we aim to enhance the fMRIPrep pipeline by integrating AFNI's left and right flip detection feature. This tool detects potential left-right flips between subject EPIs and anatomicals, ensuring accurate alignment and analysis of neuroimaging data.

Link to the Project

https://www.frontiersin.org/articles/10.3389/fninf.2020.00018/full

Image for the OHBM brainhack website

No response

Project lead

Céline Provins, GitHub: @celprov , discord: cprovins

Main Hub

Montreal

Other Hub covered by the leaders

• Montreal
• Asia / Pacific
• Europe / Middle East / Africa
• Americas

Skills

Having basic Python knowledge is important, however all levels of experience are welcome. Familiarity with building a workflow using Nipype is a plus but is not required.

Recommended tutorials for new contributors

• Set up a brainhack friendly computing environment
• A introduction to Bash
• Python: Writing a script
• Python: Data analysis with Python
• Python: Visualisation
• Machine learning basics
• BIDS
• Machine learning for neuroimaging
• VCS: Using Git and Github
• VCS: Data management with Datalad
• Virtualization
• High Performance Computing: Oracle cloud resource

Good first issues

No response

Twitter summary

No response

Short name for the Discord chat channel (~15 chars)

fmriprep_qa_xyflip

Please read and follow the OHBM Code of Conduct

• I agree to follow the OHBM Code of Conduct during the hackathon