Flooding brains - Mesmerizing & relaxing volumetric brain animations.

[ofgulban]

Project info

Title:
Flooding brains: Mesmerizing & relaxing volumetric brain animations.

Project lead:
@ofgulban - Omer Faruk Gulban

Timezone:
UTC+2

Description:
After 🎆 exploding brains 🎆 in the last year's brainhack, now it is time for animations of a more relaxing sort. I will be mainly using a few LayNii programs that I have been developing for high resolution imaging over the last year (e.g. layers, columns) to generate mesmerizing brain animations. I will focus on using animal brains from one of my favorite projects: https://braincatalogue.org/. I already have a few exotic brains segmented and animated using triangular meshes:

• Dophin brain 🐬
• Giraffe brain 🦒
• Okapi brain 🦓 🦒
• Rhinoceros brain 🦏

However, in this project, the focus will be on generating 3D volumetric renders directly using nifti images, rather than using triangular meshes. For this, I will be using the excellent PyVista.

Link to project:
https://github.com/ofgulban/flooding_brains

Mattermost handle:
ofgulban, hbmhack-flooding_brains

Goals for the OHBM Brainhack:

• Flood animal brains.
• Flood human brains
• More brains?
• Create different compositions/shots/scenes.
• [Stretch goal] Add sound effects.

Good first issues:

• Install the dependencies and try following the guide section here.
• Create flooding animations with your own data. I will work on making this process smoother during the event.

Skills:

• Python
• C++ (not crucial)
• ffmpeg (not crucial)
• I am looking for someone who has some sound processing skills. It would be cool to add funky sounds to the animations.

Chat channel:
https://mattermost.brainhack.org/brainhack/channels/hbmhack-flooding_brains

Image for the OHBM brainhack website

Project submission

Submission checklist

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• Specify how will you acknowledge contributions (e.g. listing members on a contributing page).
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QMENTA has agreed to sponsor the event and provide computational resources through their platform.

• Get in touch with QMENTA through their Brain Innovation Hub Slack space, if you think your project would benefit from their support.

[ofgulban]

hi @ohbm/project-monitors: My project is ready!