--max_time error

[eeb74]

Hello,

I am the first person to try running the nf-core-clipseq-1.0.0 pipeline through my university's HTC after requesting for it to be installed and am running into an error. For the run time, I have it written into my script as pasted directly below:

#SBATCH -t 3-00:00 # Runtime in D-HH:MM

However, I am getting the error below when I run my script manually:

• --max_time: string [6day] does not match pattern ^[\d.]+.*(s|m|h|d)$ (6day)

What about how I have it written is not matching the pattern required for --max_time?

I have attached my log file showing this error in addition to the config file that was installed on the HTC for this nf-core pipeline install request. Running with nextflow/22.04.3

Thank you in advance for your help with this!

Config file content:

params {
config_profile_description = 'Pitt HTC cluster profile provided by nf-core/configs.'
config_profile_contact = 'Fangping Mu'
config_profile_url = 'https://crc.pitt.edu/'
}

singularity {
enabled = true
autoMounts = true
// runOptions = "--bind /zfs1:/zfs1"
}

process {
executor = 'slurm'
clusterOptions = { "${params.clusterOptions ?: ''}" }
scratch = true
}

params {
// saveReference = true
max_memory = 256.GB
max_cpus = 16
max_time = 144.h
igenomes_base = '/bgfs/genomics/refs/igenomes/'
}

Error log copy & paste:

N E X T F L O W ~ version 22.04.3
Launching /ihome/crc/install/genomics_nextflow/nf-core-clipseq-1.0.0/workflow/main.nf [thursday] DSL1 - revision: e28c82e82e

---

                                    ,--./,-.
    ___     __   __   __   ___     /,-._.--~'

|\ | |__ __ / / \ |__) |__ } { | \| | \__, \__/ | \ |___ \-.,--, .,._,'
nf-core/clipseq v1.0.0

ERROR: Validation of pipeline parameters failed!

• --max_time: string [6day] does not match pattern ^[\d.]+.*(s|m|h|d)$ (6day)