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Make COUNT_ALIGNMENT_DUPLICATES use more clever parent selection. #75

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harmonbhasin opened this issue Oct 16, 2024 · 0 comments
Open

Make COUNT_ALIGNMENT_DUPLICATES use more clever parent selection. #75

harmonbhasin opened this issue Oct 16, 2024 · 0 comments
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enhancement New feature or request priority_2

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@harmonbhasin
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Currently, our duplication analysis using Bowtie2 alignments assigns the parent of the duplicate reads as the one with the highest average phred quality score. However, as Mike pointed out there are better solutions. In the future, we may decide to implement this.
@harmonbhasin harmonbhasin added enhancement New feature or request priority_2 labels Oct 16, 2024
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