NAMESPACE

# Generated by roxygen2: do not edit by hand

export(add_refseq)
export(aggregate_top_taxa2)
export(dominant_taxa)
export(find_samples_taxa)
export(format_to_besthit)
export(get_group_abundances)
export(get_microbiome_data)
export(get_tibble)
export(join_otu_tax)
export(list_microbiome_data)
export(make_pairs)
export(percent_classified)
export(phy_to_ldf)
export(plasticity)
export(plot_abund_prev)
export(plot_alpha_diversities)
export(plot_alpha_rcurve)
export(plot_area)
export(plot_diversity_stats)
export(plot_listed_taxa)
export(plot_ordination_utils)
export(plot_ordiplot_core)
export(plot_paired_abundances)
export(plot_read_distribution)
export(plot_select_taxa)
export(plot_spaghetti)
export(plot_taxa_boxplot)
export(plot_taxa_composition)
export(plot_taxa_cv)
export(plot_taxa_heatmap)
export(prep_ternary)
export(print_ps)
export(simple_heatmap)
export(taxa_distribution)
export(taxa_summary)
export(theme_biome_utils)
exportMethods(peak_abundance)
exportMethods(peak_base)
exportMethods(peak_sample)
exportMethods(peak_taxonomy)
import(dplyr)
import(ggplot2)
import(microbiome)
import(phyloseq)
import(tidyr)
import(utils)
importFrom(Biostrings,DNAStringSet)
importFrom(RColorBrewer,brewer.pal)
importFrom(gghalves,geom_half_violin)
importFrom(ggpubr,facet)
importFrom(ggpubr,ggarrange)
importFrom(ggpubr,ggboxplot)
importFrom(ggpubr,ggstripchart)
importFrom(ggpubr,ggviolin)
importFrom(ggpubr,rotate_x_text)
importFrom(ggpubr,stat_compare_means)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,hist)
importFrom(microbiome,abundances)
importFrom(pheatmap,pheatmap)
importFrom(stats,aggregate)
importFrom(stats,cor)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,pivot_longer)