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normalized_error.txt
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normalized_error.txt
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macmanes@macmanes:/media/macmanes/hd/trim$ abyss-fac.pl *10M*fasta
n n:200 n:N50 min N80 N50 N20 max sum
44640 44640 6290 201 764 2255 4449 23361 49.24e6 10M.10.Trinity.fasta
42433 42433 6066 201 700 2088 4175 23361 44.51e6 10M.20.Trinity.fasta
45768 45768 6459 201 778 2277 4510 23362 51.08e6 10M.2.Trinity.fasta
44755 44755 6302 201 766 2257 4498 23362 49.44e6 10M.5.Trinity.fasta
45741 45741 6470 201 778 2274 4502 23290 51.06e6 raw.10M.Trinity.fasta
macmanes@macmanes:/media/macmanes/hd/trim$ abyss-fac.pl *20M*fasta
n n:200 n:N50 min N80 N50 N20 max sum
63814 63814 8788 201 940 2640 5003 23597 78.13e6 20M.10.Trinity.fasta
59053 59053 8157 201 924 2609 4965 23597 72.08e6 20M.20.Trinity.fasta
65892 65892 9025 201 941 2665 5042 23597 80.66e6 20M.2.Trinity.fasta
64203 64203 8877 201 940 2630 4961 23597 78.50e6 20M.5.Trinity.fasta
65811 65811 8948 201 942 2673 5070 23597 80.75e6 raw.20M.Trinity.fasta
macmanes@macmanes:/media/macmanes/hd/trim$ abyss-fac.pl *50M*fasta
n n:200 n:N50 min N80 N50 N20 max sum
112133 112133 14391 201 869 2751 5277 23617 133.8e6 50M.10.Trinity.fasta
103220 103220 13465 201 890 2752 5193 23617 124.3e6 50M.20.Trinity.fasta
114651 114651 14566 201 840 2729 5260 23619 135.0e6 50M.2.Trinity.fasta
112708 112708 14474 201 870 2754 5271 23617 134.6e6 50M.5.Trinity.fasta
114824 114824 14470 201 849 2753 5360 23619 136.1e6 raw.50M.Trinity.fasta
macmanes@macmanes:/media/macmanes/hd/trim$ abyss-fac.pl *75M*fasta
n n:200 n:N50 min N80 N50 N20 max sum
141993 141993 17532 201 797 2753 5326 23644 164.8e6 75M.10.Trinity.fasta
132439 132439 16709 201 860 2800 5341 24855 158.5e6 75M.20.Trinity.fasta
145327 145327 17705 201 761 2697 5392 23718 165.3e6 75M.2.Trinity.fasta
142441 142441 17570 201 796 2738 5336 24316 165.3e6 75M.5.Trinity.fasta
145163 145163 17715 201 763 2700 5370 23718 165.2e6 raw.75M.Trinity.fasta
macmanes@macmanes:/media/macmanes/hd/trim$ abyss-fac.pl *100M*fasta
n n:200 n:N50 min N80 N50 N20 max sum
167769 167769 20434 201 744 2682 5338 24319 189.7e6 100M.10.Trinity.fasta
156083 156083 19033 201 792 2729 5532 32305 181.4e6 100M.20.Trinity.fasta
171220 171220 20312 201 717 2653 5461 32306 190.7e6 100M.2.Trinity.fasta
168021 168021 20349 201 735 2666 5340 32306 189.0e6 100M.5.Trinity.fasta
171383 171383 20338 201 719 2658 5476 32306 191.3e6 raw.100M.Trinity.fasta
macmanes@macmanes:/media/macmanes/hd/trim$
PHRED 10M 20M 50M 75M 100M
raw 634.5 529.6 363.1 312.6 277.3
2 667.8 527.5 366.7 314.7 279.6
5 652.6 540.7 367.2 311.3 276.4
10 647.9 532.7 369.6 315.7 279.7
20 697.0 569.5 390.8 323.2 290.6