- Improved visualization
visualize.py
now allows for a--plane
argument (-p
) where you can specifyaxial
,coronal
, orsagittal
.- The pixels will be interpolated to an aspect ratio consistent with the real world in all cases.
- Cropped cases 22, 61, and 117
- These had a second series at a different contrast phase appended to the end of their z-dimensions (#6).
- Parapelvic cysts and hydronephrosis were corrected
- Fixed holes in tumor and kidney annotations
- Thresholds were adjusted to avoid the exclusion of hypodense tissue in kidney and tumor interiors (#12).
- Four cases were replaced entirely
- The tumors in cases 60 and 174 were complex cysts. The decision was made to exclude these from our cohort to avoid ambiguity with other cysts labeled as kidney.
- The tumor in case 15 was actually a blown out lower pole.
- The tumor in case 102 was actually an adrenal cortical carcinoma abutting the kidney.
- The pelvic kidney in case 40 was annotated
- This was missed in the original release
- The hilum issues in case 42 were corrected
- On both the left and right side, the upper pole hilums were not handled correctly.
- The affine matrices were corrected
- 210 Cases in original spacing were added, along with some starter code to visualize the imaging and segmentation labels in the axial plane.