Set initial color for all track types

dev/multi-select/multi-select.html

@@ -297,8 +297,18 @@
                 "aliasURL": "https://s3.amazonaws.com/igv.org.genomes/hg19/hg19_alias.tab",
                 "chromosomeOrder": "chr1, chr2, chr3, chr4, chr5, chr6, chr7, chr8, chr9, chr10, chr11, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr19, chr20, chr21, chr22, chrX, chrY"
             },
-            "locus": "chr8:128,746,680-128,756,197",
+            "locus": "chr10:1-120,250,001",
             "tracks": [
+                {
+                    "url": "https://www.dropbox.com/scl/fi/yczvlb961oh77sgv9syc6/MP_skin_CRUSH_Loxafr3.0_HiC.bedgraph?rlkey=e2j6wm62gxoiiyhh0m3bems7q&dl=0",
+                    "name": "MP_skin_CRUSH_Loxafr3.0_HiC.bedgraph",
+                    "format": "bedgraph",
+                    "type": "wig",
+                    "color": "rgb(255, 114, 110)",
+                    "altColor": "rgb(106, 207, 255)",
+                    "min": -100,
+                    "max": 100
+                },
                 {
                     "name": "Homo sapiens A549 treated with 0.02% ethanol for 1 hour EP300 ",
                     "url": "https://www.encodeproject.org/files/ENCFF000NDX/@@download/ENCFF000NDX.bigWig",

js/blat/blatTrack.js

@@ -35,6 +35,10 @@ class BlatTrack extends FeatureTrack {
             this._features = features;
             this.featureSource = new StaticFeatureSource({features}, this.browser.genome)
         }
+
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
     }
 
     openTableView() {

js/feature/featureTrack.js

@@ -99,6 +99,9 @@ class FeatureTrack extends TrackBase {
             this.visibilityWindow = await this.featureSource.defaultVisibilityWindow()
         }
 
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
         return this
 
     }

js/feature/interactionTrack.js

@@ -135,6 +135,9 @@ class InteractionTrack extends TrackBase {
             this.featureSource.visibilityWindow = this.visibilityWindow  // <- this looks odd
         }
 
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
         return this
     }
 

js/feature/segTrack.js

@@ -93,6 +93,10 @@ class SegTrack extends TrackBase {
         if (this.header) {
             this.setTrackProperties(this.header)
         }
+
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
     }
 
 

js/feature/spliceJunctionTrack.js

@@ -84,6 +84,9 @@ class SpliceJunctionTrack extends TrackBase {
             this.visibilityWindow = await this.featureSource.defaultVisibilityWindow()
         }
 
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
         return this
 
     }

js/feature/wigTrack.js

@@ -77,6 +77,10 @@ class WigTrack extends TrackBase {
         const header = await this.getHeader()
         if (this.disposed) return   // This track was removed during async load
         if (header) this.setTrackProperties(header)
+
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
     }
 
     get supportsWholeGenome() {

js/gcnv/gcnvTrack.js

@@ -78,6 +78,10 @@ class GCNVTrack extends TrackBase {
                 }
             }
         }
+
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
     }
 
     menuItemList() {

js/gwas/gwasTrack.js

@@ -103,6 +103,9 @@ class GWASTrack extends TrackBase {
             }
         }
 
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
         return this
 
     }

js/shoebox/shoeboxTrack.js

@@ -77,6 +77,9 @@ class ShoeboxTrack extends TrackBase {
         // This shouldn't be neccessary
         if (!this.scale) this.scale = 1.0
 
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
     }
 
     get color() {

js/trackBase.js

@@ -95,8 +95,8 @@ class TrackBase {
             }
         }
 
-        this._initialColor = this.color || this.constructor.defaultColor
-        this._initialAltColor = this.altColor || this.constructor.defaultColor
+        // this._initialColor = this.color || this.constructor.defaultColor
+        // this._initialAltColor = this.altColor || this.constructor.defaultColor
 
         if (config.name || config.label) {
             this.name = config.name || config.label
@@ -138,6 +138,16 @@ class TrackBase {
         }
     }
 
+    async postInit(){
+
+        console.log(`TrackBase - track(${ this.type }) - postInit()`)
+
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
+        return this
+    }
+
     get name() {
         return this._name
     }

js/variant/variantTrack.js

@@ -168,6 +168,9 @@ class VariantTrack extends TrackBase {
             }
         }
 
+        this._initialColor = this.color || this.constructor.defaultColor
+        this._initialAltColor = this.altColor || this.constructor.defaultColor
+
         return this
     }